Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47264 * 2 1 4 4 C 1.37947 * 119.90381 * 265.01966 * 3 2 1 5 5 C 1.38263 * 120.26541 * 179.97438 * 4 3 2 6 6 C 1.38355 * 119.88088 * 359.87818 * 5 4 3 7 7 C 1.37874 * 120.08008 * 0.06846 * 6 5 4 8 8 C 1.39003 * 120.48600 * 0.14809 * 7 6 5 9 9 N 1.40034 * 110.95799 * 179.51502 * 8 7 6 10 10 C 1.47907 * 107.88922 * 18.31518 * 9 8 7 11 11 H 1.08998 * 110.93882 * 214.38824 * 10 9 8 12 12 C 1.50698 * 110.77750 * 91.02810 * 10 9 8 13 13 H 1.07994 * 120.00370 * 246.78450 * 12 10 9 14 14 C 1.37883 * 119.99639 * 66.79320 * 12 10 9 15 15 N 1.31518 * 119.99847 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99935 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47194 * 89.99447 * 16 14 12 18 18 H 1.48498 * 109.46979 * 209.99607 * 16 14 12 19 19 H 1.48506 * 109.46805 * 329.99408 * 16 14 12 20 20 C 1.51571 * 131.56936 * 180.39210 * 7 6 5 21 21 H 1.08996 * 109.46872 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46830 * 299.99815 * 1 2 3 23 23 H 1.09003 * 109.46935 * 59.99622 * 1 2 3 24 24 H 1.09006 * 109.47054 * 239.99997 * 2 1 3 25 25 H 1.09003 * 109.46935 * 120.00377 * 2 1 3 26 26 H 1.08001 * 119.86978 * 359.96599 * 4 3 2 27 27 H 1.07996 * 120.06310 * 180.14603 * 5 4 3 28 28 H 1.08003 * 119.95638 * 180.08849 * 6 5 4 29 29 H 1.00902 * 110.99580 * 256.49581 * 9 8 7 30 30 H 0.97005 * 119.99371 * 180.02562 * 15 14 12 31 31 H 1.09011 * 110.74122 * 282.08971 * 20 7 6 32 32 H 1.08997 * 110.74208 * 45.23370 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3596 2.0346 -1.1913 5 6 2.8207 3.3380 -1.2000 6 6 2.9522 4.0306 -0.0096 7 6 2.6256 3.4221 1.1837 8 6 2.1654 2.1106 1.2037 9 7 1.9053 1.6909 2.5141 10 6 1.7835 2.8969 3.3617 11 1 2.1745 2.7112 4.3620 12 6 0.3514 3.3616 3.4275 13 1 0.0684 4.3038 2.9819 14 6 -0.5974 2.5839 4.0567 15 7 -0.2528 1.4364 4.5990 16 14 -2.3727 3.1595 4.1377 17 1 -3.1100 2.6592 2.9497 18 1 -3.0079 2.6330 5.3724 19 1 -2.4114 4.6439 4.1554 20 6 2.6602 3.9266 2.6125 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2552 1.4948 -2.1209 27 1 3.0736 3.8162 -2.1348 28 1 3.3110 5.0493 -0.0151 29 1 2.6377 1.0843 2.8515 30 1 -0.9205 0.8891 5.0413 31 1 3.6793 3.9202 2.9996 32 1 2.2298 4.9257 2.6797 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = 5.226314 kcal Electronic energy + Delta-G solvation = -14580.113226 eV Core-core repulsion = 12311.161137 eV Total energy + Delta-G solvation = -2268.952090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18264 -37.45553 -34.94807 -34.31106 -31.16697 -30.03073 -28.92345 -26.88695 -24.53513 -22.42891 -22.06841 -20.89930 -18.67869 -17.58452 -16.66518 -16.15547 -15.89939 -15.80740 -14.79389 -14.57498 -14.28339 -14.15097 -13.75350 -13.40728 -13.06892 -12.75620 -12.73400 -12.58463 -12.32913 -12.28547 -11.71583 -11.62852 -11.46953 -11.16955 -10.59543 -10.17572 -9.36449 -8.36672 -8.03447 -6.22929 0.62670 0.70273 1.37883 1.39998 1.48468 2.42459 2.97840 3.09227 3.60555 3.99203 4.06562 4.16107 4.41415 4.46240 4.60826 4.62586 4.64262 4.75659 4.82121 4.89273 5.08701 5.16780 5.22427 5.31302 5.42819 5.50398 5.68740 5.73988 5.78106 5.92086 6.15103 6.23829 6.57135 6.92623 6.95392 7.47965 8.98650 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027706 B = 0.011320 C = 0.009665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.356892 B = 2472.847505 C = 2896.208802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.149 4.149 6 C -0.105 4.105 7 C -0.167 4.167 8 C 0.104 3.896 9 N -0.616 5.616 10 C 0.213 3.787 11 H 0.028 0.972 12 C -0.530 4.530 13 H 0.044 0.956 14 C 0.038 3.962 15 N -0.890 5.890 16 Si 0.943 3.057 17 H -0.283 1.283 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.099 4.099 21 H 0.065 0.935 22 H 0.022 0.978 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.327 0.673 30 H 0.258 0.742 31 H 0.072 0.928 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 0.072 -10.125 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.168 4.168 6 C -0.124 4.124 7 C -0.170 4.170 8 C 0.004 3.996 9 N -0.242 5.242 10 C 0.107 3.893 11 H 0.046 0.954 12 C -0.568 4.568 13 H 0.062 0.938 14 C -0.165 4.165 15 N -0.527 5.527 16 Si 0.769 3.231 17 H -0.209 1.209 18 H -0.204 1.204 19 H -0.193 1.193 20 C -0.138 4.138 21 H 0.084 0.916 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.559 -0.254 -9.978 10.973 hybrid contribution -0.307 0.529 0.683 0.917 sum 4.253 0.275 -9.294 10.225 Atomic orbital electron populations 1.21594 0.95682 1.01316 1.00653 1.20280 0.95532 0.92102 1.02153 1.19644 1.03332 0.97777 0.91081 1.21044 0.99079 0.95490 0.96801 1.21207 1.02823 0.94883 0.97889 1.20620 1.00575 1.00069 0.91132 1.21336 1.02318 0.97533 0.95860 1.19934 0.93916 0.94194 0.91550 1.58571 1.45796 1.20213 0.99663 1.19940 0.94289 0.84174 0.90912 0.95436 1.21137 0.94232 1.04809 1.36665 0.93817 1.25585 1.01916 0.94698 0.94268 1.70086 1.34621 1.12048 1.35992 0.85808 0.81129 0.78753 0.77378 1.20910 1.20409 1.19329 1.21732 0.99553 1.00569 0.91916 0.91576 0.95851 0.92525 0.89200 0.92821 0.83424 0.83175 0.85295 0.84765 0.93282 0.91003 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.90 71.98 0.71 -4.01 16 2 C -0.06 -2.09 6.00 29.85 0.18 -1.91 16 3 C -0.12 -4.27 5.16 -19.66 -0.10 -4.37 16 4 C -0.11 -3.21 9.65 22.21 0.21 -3.00 16 5 C -0.15 -4.36 10.06 22.30 0.22 -4.13 16 6 C -0.11 -3.59 10.03 22.21 0.22 -3.36 16 7 C -0.17 -6.91 6.22 -19.49 -0.12 -7.03 16 8 C 0.10 4.51 6.43 38.29 0.25 4.76 16 9 N -0.62 -29.76 6.54 -316.27 -2.07 -31.82 16 10 C 0.21 10.85 3.24 44.52 0.14 11.00 16 11 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 12 C -0.53 -30.03 8.70 25.60 0.22 -29.81 16 13 H 0.04 2.51 7.62 -2.91 -0.02 2.48 16 14 C 0.04 2.16 5.44 84.66 0.46 2.62 16 15 N -0.89 -52.03 13.12 21.45 0.28 -51.75 16 16 Si 0.94 44.87 29.54 68.60 2.03 46.90 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.10 -4.26 6.55 30.67 0.20 -4.06 16 21 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.09 2.30 8.05 -2.38 -0.02 2.29 16 25 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 26 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.33 14.84 8.85 -89.69 -0.79 14.04 16 30 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 31 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.07 2.94 7.79 -2.39 -0.02 2.92 16 Total: -1.00 -63.25 271.50 3.15 -60.10 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.31 Total: 19.89 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 2.61 Total: -43.31 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.79 Total: -83.58 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.25 3.15 -60.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.327 kcal (2) G-P(sol) polarization free energy of solvation -63.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds