Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47190 * 2 1 4 4 C 1.37955 * 119.89932 * 264.99527 * 3 2 1 5 5 C 1.38265 * 120.26359 * 179.77899 * 4 3 2 6 6 C 1.38346 * 119.88567 * 0.38570 * 5 4 3 7 7 C 1.37879 * 120.07889 * 359.92718 * 6 5 4 8 8 C 1.39006 * 120.48193 * 359.85054 * 7 6 5 9 9 N 1.40038 * 110.95825 * 180.48588 * 8 7 6 10 10 C 1.47912 * 107.88768 * 341.68369 * 9 8 7 11 11 H 1.08999 * 110.77848 * 145.53835 * 10 9 8 12 12 C 1.50699 * 110.94198 * 268.89835 * 10 9 8 13 13 H 1.07996 * 120.00206 * 113.30097 * 12 10 9 14 14 C 1.37880 * 119.99735 * 293.30752 * 12 10 9 15 15 N 1.31513 * 120.00133 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99832 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46744 * 90.00036 * 16 14 12 18 18 H 1.48501 * 109.47003 * 209.99665 * 16 14 12 19 19 H 1.48494 * 109.47340 * 329.99916 * 16 14 12 20 20 C 1.51576 * 131.57334 * 179.61002 * 7 6 5 21 21 H 1.09000 * 109.47512 * 300.00735 * 1 2 3 22 22 H 1.09002 * 109.47114 * 60.00017 * 1 2 3 23 23 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47219 * 239.99978 * 2 1 3 25 25 H 1.09002 * 109.47114 * 119.99983 * 2 1 3 26 26 H 1.08002 * 119.87121 * 0.06347 * 4 3 2 27 27 H 1.07998 * 120.05922 * 180.36343 * 5 4 3 28 28 H 1.08001 * 119.96449 * 179.90081 * 6 5 4 29 29 H 1.00895 * 111.00607 * 103.50204 * 9 8 7 30 30 H 0.96994 * 119.99695 * 179.97438 * 15 14 12 31 31 H 1.09006 * 110.73409 * 314.58301 * 20 7 6 32 32 H 1.08997 * 110.74470 * 77.91194 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0344 -1.1914 5 6 2.8172 3.3392 -1.2005 6 6 2.9544 4.0299 -0.0097 7 6 2.6345 3.4191 1.1843 8 6 2.1696 2.1092 1.2039 9 7 1.8970 1.6941 2.5132 10 6 2.6029 2.6092 3.4363 11 1 2.0235 2.7629 4.3466 12 6 3.9792 2.0892 3.7624 13 1 4.8533 2.6260 3.4247 14 6 4.1224 0.9279 4.4919 15 7 3.0579 0.2744 4.9035 16 14 5.8284 0.2829 4.8956 17 1 6.2815 0.8569 6.1881 18 1 5.7860 -1.1978 4.9994 19 1 6.7738 0.6769 3.8204 20 6 2.6908 3.9161 2.6151 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2544 1.4949 -2.1211 27 1 3.0671 3.8182 -2.1356 28 1 3.3131 5.0486 -0.0153 29 1 0.9042 1.6939 2.6933 30 1 3.1587 -0.5426 5.4164 31 1 3.6321 4.4308 2.8081 32 1 1.8429 4.5659 2.8317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = 21.210410 kcal Electronic energy + Delta-G solvation = -14497.341691 eV Core-core repulsion = 12229.082724 eV Total energy + Delta-G solvation = -2268.258967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63616 -35.85900 -33.58933 -32.27017 -29.63440 -28.32948 -27.46633 -24.95824 -23.12495 -20.67726 -20.57159 -19.42855 -16.71689 -15.87431 -14.91143 -14.56985 -14.40662 -14.11019 -13.32923 -13.26288 -12.69950 -12.40308 -12.18471 -11.84482 -11.54072 -11.19228 -10.98650 -10.85638 -10.66952 -10.61314 -10.34481 -10.06258 -9.64703 -9.26538 -8.60070 -8.45288 -7.93192 -6.68833 -5.97383 -4.06870 2.07091 2.16065 3.31839 3.39039 3.43542 4.42701 4.45370 4.92928 5.37047 5.45366 5.48462 5.59130 5.68696 5.87011 5.89101 6.03640 6.13477 6.24560 6.30406 6.33898 6.45033 6.53712 6.65877 6.80563 6.94664 7.08120 7.19627 7.23251 7.43075 7.60256 7.90348 8.18352 8.36163 8.68728 8.98659 9.61605 11.09734 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027919 B = 0.010547 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.645413 B = 2654.107107 C = 3026.529429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.108 4.108 5 C -0.161 4.161 6 C -0.099 4.099 7 C -0.143 4.143 8 C 0.140 3.860 9 N -0.602 5.602 10 C 0.217 3.783 11 H 0.050 0.950 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.082 3.918 15 N -0.865 5.865 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.108 4.108 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.327 0.673 30 H 0.259 0.741 31 H 0.074 0.926 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 2.868 -8.422 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.107 4.107 4 C -0.127 4.127 5 C -0.180 4.180 6 C -0.118 4.118 7 C -0.147 4.147 8 C 0.039 3.961 9 N -0.229 5.229 10 C 0.113 3.887 11 H 0.068 0.932 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.124 4.124 15 N -0.502 5.502 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.147 4.147 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.153 0.847 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.439 2.138 -8.168 9.116 hybrid contribution 0.613 0.288 0.078 0.681 sum -2.827 2.425 -8.089 8.906 Atomic orbital electron populations 1.21670 0.95805 1.00827 1.01371 1.20355 0.95234 0.93265 1.02488 1.19258 1.04117 0.96048 0.91257 1.20605 1.00578 0.95040 0.96444 1.20711 1.04978 0.95361 0.96994 1.20268 1.00776 0.99157 0.91555 1.21214 1.03280 0.95017 0.95169 1.19700 0.95072 0.90572 0.90733 1.58708 1.11603 1.53706 0.98888 1.20125 0.95273 0.83582 0.89757 0.93198 1.20892 0.90632 1.09543 1.34224 0.92597 1.24934 0.96292 0.96288 0.94842 1.69977 1.28224 1.16498 1.35453 0.86678 0.85042 0.78110 0.78588 1.20691 1.21196 1.19946 1.21918 1.00788 1.00637 0.91332 0.92745 0.93471 0.93120 0.92433 0.90066 0.87049 0.87148 0.87538 0.84713 0.93172 0.90763 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 37.15 0.37 -1.70 16 2 C -0.08 -1.31 6.01 -27.89 -0.17 -1.48 16 3 C -0.10 -2.01 5.16 -104.31 -0.54 -2.55 16 4 C -0.11 -1.86 9.65 -39.68 -0.38 -2.24 16 5 C -0.16 -2.71 10.06 -39.53 -0.40 -3.10 16 6 C -0.10 -1.81 10.03 -39.67 -0.40 -2.21 16 7 C -0.14 -3.01 6.22 -104.04 -0.65 -3.66 16 8 C 0.14 3.05 6.44 -83.41 -0.54 2.51 16 9 N -0.60 -14.13 6.55 -51.31 -0.34 -14.47 16 10 C 0.22 5.37 3.23 -67.46 -0.22 5.15 16 11 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 12 C -0.51 -14.21 8.71 -34.44 -0.30 -14.51 16 13 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 14 C 0.08 2.28 5.44 -17.82 -0.10 2.19 16 15 N -0.87 -24.72 13.12 55.43 0.73 -23.99 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.11 -2.30 6.56 -26.61 -0.17 -2.47 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 25 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.33 7.07 8.85 -39.29 -0.35 6.72 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.57 7.78 -51.93 -0.40 1.16 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -29.10 271.51 -8.54 -37.63 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.51 Total: 4.24 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -3.49 Total: -24.07 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.10 -8.54 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.843 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds