Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47190 * 2 1 4 4 C 1.37955 * 119.89932 * 264.99527 * 3 2 1 5 5 C 1.38265 * 120.26359 * 179.77899 * 4 3 2 6 6 C 1.38346 * 119.88567 * 0.38570 * 5 4 3 7 7 C 1.37879 * 120.07889 * 359.92718 * 6 5 4 8 8 C 1.39006 * 120.48193 * 359.85054 * 7 6 5 9 9 N 1.40038 * 110.95825 * 180.48588 * 8 7 6 10 10 C 1.47912 * 107.88768 * 341.68369 * 9 8 7 11 11 H 1.08999 * 110.77848 * 145.53835 * 10 9 8 12 12 C 1.50699 * 110.94198 * 268.89835 * 10 9 8 13 13 H 1.07996 * 120.00206 * 113.30097 * 12 10 9 14 14 C 1.37880 * 119.99735 * 293.30752 * 12 10 9 15 15 N 1.31513 * 120.00133 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99832 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46744 * 90.00036 * 16 14 12 18 18 H 1.48501 * 109.47003 * 209.99665 * 16 14 12 19 19 H 1.48494 * 109.47340 * 329.99916 * 16 14 12 20 20 C 1.51576 * 131.57334 * 179.61002 * 7 6 5 21 21 H 1.09000 * 109.47512 * 300.00735 * 1 2 3 22 22 H 1.09002 * 109.47114 * 60.00017 * 1 2 3 23 23 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47219 * 239.99978 * 2 1 3 25 25 H 1.09002 * 109.47114 * 119.99983 * 2 1 3 26 26 H 1.08002 * 119.87121 * 0.06347 * 4 3 2 27 27 H 1.07998 * 120.05922 * 180.36343 * 5 4 3 28 28 H 1.08001 * 119.96449 * 179.90081 * 6 5 4 29 29 H 1.00895 * 111.00607 * 103.50204 * 9 8 7 30 30 H 0.96994 * 119.99695 * 179.97438 * 15 14 12 31 31 H 1.09006 * 110.73409 * 314.58301 * 20 7 6 32 32 H 1.08997 * 110.74470 * 77.91194 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0344 -1.1914 5 6 2.8172 3.3392 -1.2005 6 6 2.9544 4.0299 -0.0097 7 6 2.6345 3.4191 1.1843 8 6 2.1696 2.1092 1.2039 9 7 1.8970 1.6941 2.5132 10 6 2.6029 2.6092 3.4363 11 1 2.0235 2.7629 4.3466 12 6 3.9792 2.0892 3.7624 13 1 4.8533 2.6260 3.4247 14 6 4.1224 0.9279 4.4919 15 7 3.0579 0.2744 4.9035 16 14 5.8284 0.2829 4.8956 17 1 6.2815 0.8569 6.1881 18 1 5.7860 -1.1978 4.9994 19 1 6.7738 0.6769 3.8204 20 6 2.6908 3.9161 2.6151 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2544 1.4949 -2.1211 27 1 3.0671 3.8182 -2.1356 28 1 3.3131 5.0486 -0.0153 29 1 0.9042 1.6939 2.6933 30 1 3.1587 -0.5426 5.4164 31 1 3.6321 4.4308 2.8081 32 1 1.8429 4.5659 2.8317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = 4.597656 kcal Electronic energy + Delta-G solvation = -14498.062074 eV Core-core repulsion = 12229.082724 eV Total energy + Delta-G solvation = -2268.979350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19032 -37.46026 -34.96770 -34.32476 -31.14194 -30.03922 -28.96468 -26.89842 -24.49334 -22.40634 -22.08041 -20.97784 -18.68107 -17.51974 -16.66736 -16.15839 -16.02690 -15.71673 -14.77163 -14.67289 -14.35016 -14.12100 -13.76321 -13.37275 -12.97498 -12.90995 -12.68974 -12.56507 -12.30806 -12.28539 -11.75021 -11.61999 -11.48266 -11.18107 -10.59474 -10.18425 -9.36647 -8.38145 -8.04416 -6.24206 0.62466 0.69999 1.38158 1.40105 1.49347 2.42232 2.97918 3.08320 3.59639 3.98945 4.05837 4.14865 4.41012 4.46091 4.59195 4.60699 4.62392 4.77004 4.80998 4.92387 5.09980 5.16297 5.22899 5.32810 5.36338 5.48678 5.68329 5.73457 5.77544 5.92035 6.14451 6.23192 6.56433 6.91835 6.94546 7.46923 8.97908 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.027919 B = 0.010547 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.645413 B = 2654.107107 C = 3026.529429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.107 4.107 5 C -0.149 4.149 6 C -0.106 4.106 7 C -0.167 4.167 8 C 0.103 3.897 9 N -0.616 5.616 10 C 0.211 3.789 11 H 0.027 0.973 12 C -0.531 4.531 13 H 0.045 0.955 14 C 0.035 3.965 15 N -0.892 5.892 16 Si 0.948 3.052 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.277 1.277 20 C -0.099 4.099 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.130 0.870 29 H 0.327 0.673 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 3.154 -10.873 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.117 4.117 4 C -0.125 4.125 5 C -0.167 4.167 6 C -0.124 4.124 7 C -0.170 4.170 8 C 0.003 3.997 9 N -0.243 5.243 10 C 0.106 3.894 11 H 0.045 0.955 12 C -0.569 4.569 13 H 0.063 0.937 14 C -0.168 4.168 15 N -0.529 5.529 16 Si 0.774 3.226 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.138 4.138 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.024 2.436 -10.631 11.318 hybrid contribution 0.455 0.247 0.737 0.901 sum -2.569 2.682 -9.894 10.568 Atomic orbital electron populations 1.21614 0.94006 1.01961 1.01403 1.20342 0.96804 0.92150 1.01791 1.19625 1.03949 0.96877 0.91244 1.21042 0.99134 0.95479 0.96823 1.21206 1.02590 0.95053 0.97899 1.20620 1.00283 1.00399 0.91114 1.21336 1.04791 0.95180 0.95668 1.19926 0.97444 0.91696 0.90655 1.58500 1.11663 1.54141 1.00020 1.19955 0.93849 0.85704 0.89925 0.95490 1.21155 0.91646 1.09765 1.34371 0.93695 1.25637 0.99662 0.96575 0.94896 1.70086 1.29893 1.16786 1.36171 0.85741 0.80868 0.77478 0.78542 1.19532 1.20920 1.20156 1.21734 1.01237 0.99111 0.91668 0.94471 0.91604 0.91469 0.89986 0.93764 0.83484 0.83146 0.85242 0.84723 0.93234 0.91237 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.89 71.98 0.71 -3.02 16 2 C -0.07 -2.45 6.01 29.85 0.18 -2.27 16 3 C -0.11 -4.25 5.16 -19.66 -0.10 -4.35 16 4 C -0.11 -3.26 9.65 22.21 0.21 -3.04 16 5 C -0.15 -4.36 10.06 22.30 0.22 -4.14 16 6 C -0.11 -3.60 10.03 22.21 0.22 -3.38 16 7 C -0.17 -6.91 6.22 -19.49 -0.12 -7.03 16 8 C 0.10 4.49 6.44 38.28 0.25 4.73 16 9 N -0.62 -30.01 6.55 -316.25 -2.07 -32.09 16 10 C 0.21 10.85 3.23 44.52 0.14 11.00 16 11 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 12 C -0.53 -30.21 8.71 25.60 0.22 -29.98 16 13 H 0.04 2.58 7.62 -2.91 -0.02 2.56 16 14 C 0.04 1.99 5.44 84.66 0.46 2.45 16 15 N -0.89 -52.42 13.12 21.45 0.28 -52.14 16 16 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 C -0.10 -4.27 6.56 30.67 0.20 -4.07 16 21 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 24 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 25 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 26 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 28 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 29 H 0.33 14.98 8.85 -89.70 -0.79 14.18 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.07 2.98 7.78 -2.38 -0.02 2.96 16 32 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -63.58 271.51 3.15 -60.43 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.31 Total: 19.88 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 2.61 Total: -43.10 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.79 Total: -84.22 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.58 3.15 -60.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.032 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds