Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38295 * 120.08873 * 2 1 4 4 C 1.37823 * 120.23461 * 180.02562 * 3 2 1 5 5 C 1.39677 * 120.27882 * 359.95822 * 4 3 2 6 6 C 1.38600 * 119.03048 * 0.04485 * 5 4 3 7 7 C 1.38172 * 120.47083 * 359.97234 * 6 5 4 8 8 C 1.51215 * 108.54104 * 180.02562 * 6 5 4 9 9 C 1.53753 * 104.53813 * 359.97438 * 8 6 5 10 10 H 1.08995 * 110.30431 * 119.03001 * 9 8 6 11 11 C 1.53006 * 110.29823 * 241.07621 * 9 8 6 12 12 C 1.50699 * 109.46610 * 184.99967 * 11 9 8 13 13 H 1.07998 * 120.00857 * 359.97438 * 12 11 9 14 14 C 1.37886 * 119.99708 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99820 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99904 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47416 * 59.99788 * 16 14 12 18 18 H 1.48506 * 109.47160 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47293 * 299.99636 * 16 14 12 20 20 N 1.39585 * 129.32167 * 180.02562 * 5 4 3 21 21 H 1.08998 * 109.47219 * 269.98229 * 1 2 3 22 22 H 1.09001 * 109.46612 * 29.97451 * 1 2 3 23 23 H 1.08996 * 109.47193 * 149.97707 * 1 2 3 24 24 H 1.07997 * 119.88252 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.86470 * 179.97438 * 4 3 2 26 26 H 1.08000 * 119.92273 * 180.02562 * 7 6 5 27 27 H 1.09002 * 110.42306 * 241.23569 * 8 6 5 28 28 H 1.08996 * 110.52972 * 118.81027 * 8 6 5 29 29 H 1.08992 * 109.47046 * 304.99704 * 11 9 8 30 30 H 1.08997 * 109.47395 * 65.00244 * 11 9 8 31 31 H 0.97002 * 119.99655 * 180.02562 * 15 14 12 32 32 H 0.96998 * 124.95038 * 0.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1966 0.0000 4 6 3.5786 1.2001 -0.0005 5 6 4.2859 -0.0043 -0.0002 6 6 3.5815 -1.1980 -0.0003 7 6 2.1998 -1.1962 -0.0001 8 6 4.5719 -2.3407 0.0008 9 6 5.9494 -1.6576 0.0008 10 1 6.5083 -1.9335 0.8950 11 6 6.7337 -2.0444 -1.2547 12 6 8.1229 -1.4656 -1.1772 13 1 8.4170 -0.8801 -0.3187 14 6 9.0184 -1.6827 -2.2030 15 7 8.6602 -2.3952 -3.2487 16 14 10.7401 -0.9647 -2.1073 17 1 11.4331 -1.4984 -0.9072 18 1 11.5015 -1.3402 -3.3259 19 1 10.6550 0.5148 -2.0127 20 7 5.6650 -0.2202 -0.0001 21 1 -0.3633 -0.0003 1.0276 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6599 2.1316 0.0004 25 1 4.1140 2.1380 -0.0009 26 1 1.6599 -2.1315 0.0003 27 1 4.4501 -2.9504 -0.8946 28 1 4.4499 -2.9514 0.8953 29 1 6.7958 -3.1304 -1.3241 30 1 6.2254 -1.6525 -2.1357 31 1 9.2903 -2.5483 -3.9702 32 1 6.3369 0.4793 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = 11.973004 kcal Electronic energy + Delta-G solvation = -13920.585129 eV Core-core repulsion = 11651.925598 eV Total energy + Delta-G solvation = -2268.659531 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85315 -36.53489 -33.10690 -31.73476 -30.83757 -29.31159 -27.08209 -25.44919 -23.19353 -21.54996 -20.16371 -19.94662 -16.96053 -16.26326 -15.37428 -14.73219 -14.53363 -14.06665 -13.56981 -13.24860 -13.16033 -12.28760 -12.27182 -11.98668 -11.69210 -11.63922 -11.49400 -11.10272 -11.00276 -10.61089 -10.42163 -10.31280 -9.90516 -9.16089 -9.08515 -8.43840 -8.32972 -6.59806 -6.06534 -4.10074 1.85283 2.04616 3.28152 3.33492 3.34947 4.14336 4.25761 4.39761 5.05992 5.26241 5.29944 5.39535 5.52935 5.56739 5.77576 5.80205 5.88091 5.97973 6.01844 6.11573 6.41477 6.48669 6.55737 6.77490 6.82999 7.01702 7.07032 7.24284 7.51444 7.63784 7.88158 7.92979 8.30512 8.59566 8.95065 9.54062 11.04398 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.056810 B = 0.006260 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.750151 B = 4471.748304 C = 4678.279264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.165 4.165 3 C -0.074 4.074 4 C -0.195 4.195 5 C 0.209 3.791 6 C -0.174 4.174 7 C -0.060 4.060 8 C -0.082 4.082 9 C 0.148 3.852 10 H 0.064 0.936 11 C 0.014 3.986 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 N -0.719 5.719 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.262 0.738 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 3.771 6.526 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.168 4.168 3 C -0.093 4.093 4 C -0.219 4.219 5 C 0.102 3.898 6 C -0.179 4.179 7 C -0.079 4.079 8 C -0.119 4.119 9 C 0.044 3.956 10 H 0.082 0.918 11 C -0.024 4.024 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 N -0.346 5.346 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.490 3.563 6.351 13.603 hybrid contribution 1.418 0.713 -0.145 1.594 sum -10.071 4.276 6.206 12.579 Atomic orbital electron populations 1.20550 0.91928 1.01748 1.01135 1.19382 0.95237 0.92909 1.09227 1.20483 0.93043 0.96984 0.98798 1.20240 0.93896 0.95558 1.12165 1.18534 0.85368 0.93912 0.92022 1.19993 0.93478 0.94694 1.09722 1.20117 0.91941 0.97132 0.98689 1.21180 0.92549 0.96059 1.02162 1.21669 0.94183 0.78915 1.00865 0.91758 1.19548 0.94387 0.97054 0.91418 1.21096 0.97266 1.33197 1.04512 0.92879 1.25006 0.98646 0.95212 0.95385 1.69947 1.35637 1.39195 1.08330 0.86659 0.84420 0.79494 0.77414 1.20233 1.21250 1.20316 1.45090 1.02295 1.08010 1.79238 0.92448 0.92459 0.92399 0.86853 0.87051 0.86989 0.90065 0.91072 0.95455 0.95856 0.92841 0.75159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.02 36.01 0.36 -0.70 16 2 C -0.17 -2.38 5.88 -104.60 -0.62 -3.00 16 3 C -0.07 -1.09 9.68 -39.71 -0.38 -1.47 16 4 C -0.20 -3.19 10.07 -39.20 -0.39 -3.59 16 5 C 0.21 3.88 7.03 -83.66 -0.59 3.29 16 6 C -0.17 -3.11 6.23 -104.26 -0.65 -3.76 16 7 C -0.06 -0.94 9.70 -39.61 -0.38 -1.32 16 8 C -0.08 -1.48 6.59 -27.24 -0.18 -1.66 16 9 C 0.15 3.05 3.61 -67.52 -0.24 2.80 16 10 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.01 0.34 4.46 -27.88 -0.12 0.22 16 12 C -0.52 -14.24 8.96 -34.44 -0.31 -14.55 16 13 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 N -0.72 -14.07 6.01 -51.67 -0.31 -14.38 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 23 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.41 7.76 8.96 -40.82 -0.37 7.40 16 LS Contribution 271.60 15.07 4.09 4.09 Total: -1.00 -29.61 271.60 -8.64 -38.25 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.53 Total: 3.64 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -3.61 Total: -22.16 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.43 Total: -40.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.61 -8.64 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.227 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds