Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38295 * 120.08873 * 2 1 4 4 C 1.37823 * 120.23461 * 180.02562 * 3 2 1 5 5 C 1.39677 * 120.27882 * 359.95822 * 4 3 2 6 6 C 1.38600 * 119.03048 * 0.04485 * 5 4 3 7 7 C 1.38172 * 120.47083 * 359.97234 * 6 5 4 8 8 C 1.51215 * 108.54104 * 180.02562 * 6 5 4 9 9 C 1.53753 * 104.53813 * 359.97438 * 8 6 5 10 10 H 1.08995 * 110.30431 * 119.03001 * 9 8 6 11 11 C 1.53006 * 110.29823 * 241.07621 * 9 8 6 12 12 C 1.50699 * 109.46610 * 184.99967 * 11 9 8 13 13 H 1.07998 * 120.00857 * 359.97438 * 12 11 9 14 14 C 1.37886 * 119.99708 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99820 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99904 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47416 * 59.99788 * 16 14 12 18 18 H 1.48506 * 109.47160 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47293 * 299.99636 * 16 14 12 20 20 N 1.39585 * 129.32167 * 180.02562 * 5 4 3 21 21 H 1.08998 * 109.47219 * 269.98229 * 1 2 3 22 22 H 1.09001 * 109.46612 * 29.97451 * 1 2 3 23 23 H 1.08996 * 109.47193 * 149.97707 * 1 2 3 24 24 H 1.07997 * 119.88252 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.86470 * 179.97438 * 4 3 2 26 26 H 1.08000 * 119.92273 * 180.02562 * 7 6 5 27 27 H 1.09002 * 110.42306 * 241.23569 * 8 6 5 28 28 H 1.08996 * 110.52972 * 118.81027 * 8 6 5 29 29 H 1.08992 * 109.47046 * 304.99704 * 11 9 8 30 30 H 1.08997 * 109.47395 * 65.00244 * 11 9 8 31 31 H 0.97002 * 119.99655 * 180.02562 * 15 14 12 32 32 H 0.96998 * 124.95038 * 0.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1966 0.0000 4 6 3.5786 1.2001 -0.0005 5 6 4.2859 -0.0043 -0.0002 6 6 3.5815 -1.1980 -0.0003 7 6 2.1998 -1.1962 -0.0001 8 6 4.5719 -2.3407 0.0008 9 6 5.9494 -1.6576 0.0008 10 1 6.5083 -1.9335 0.8950 11 6 6.7337 -2.0444 -1.2547 12 6 8.1229 -1.4656 -1.1772 13 1 8.4170 -0.8801 -0.3187 14 6 9.0184 -1.6827 -2.2030 15 7 8.6602 -2.3952 -3.2487 16 14 10.7401 -0.9647 -2.1073 17 1 11.4331 -1.4984 -0.9072 18 1 11.5015 -1.3402 -3.3259 19 1 10.6550 0.5148 -2.0127 20 7 5.6650 -0.2202 -0.0001 21 1 -0.3633 -0.0003 1.0276 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6599 2.1316 0.0004 25 1 4.1140 2.1380 -0.0009 26 1 1.6599 -2.1315 0.0003 27 1 4.4501 -2.9504 -0.8946 28 1 4.4499 -2.9514 0.8953 29 1 6.7958 -3.1304 -1.3241 30 1 6.2254 -1.6525 -2.1357 31 1 9.2903 -2.5483 -3.9702 32 1 6.3369 0.4793 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = -4.930212 kcal Electronic energy + Delta-G solvation = -13921.318107 eV Core-core repulsion = 11651.925598 eV Total energy + Delta-G solvation = -2269.392510 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20088 -37.90234 -35.10539 -33.11813 -32.23159 -30.84150 -28.67889 -26.73859 -25.02564 -22.86623 -21.72603 -21.31139 -18.64868 -18.05672 -16.76094 -16.67598 -15.72436 -15.58271 -14.86165 -14.54237 -14.38786 -14.02906 -13.69021 -13.58883 -13.26562 -12.88225 -12.84713 -12.77017 -12.50170 -12.24519 -12.22890 -11.77241 -11.56753 -11.16063 -10.60347 -10.54663 -9.57458 -8.22464 -7.98633 -6.33009 0.60796 0.79901 1.38354 1.40570 1.48448 2.38204 2.70263 3.00256 3.13159 3.78511 3.96026 4.21893 4.28590 4.34056 4.54719 4.58217 4.72502 4.80865 4.94111 5.00170 5.03172 5.12509 5.24344 5.30175 5.40090 5.51365 5.62692 5.70334 5.79704 5.88695 6.05499 6.20237 6.47255 6.81618 7.13961 7.35892 8.89621 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.056810 B = 0.006260 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.750151 B = 4471.748304 C = 4678.279264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.159 4.159 3 C -0.077 4.077 4 C -0.200 4.200 5 C 0.176 3.824 6 C -0.193 4.193 7 C -0.069 4.069 8 C -0.077 4.077 9 C 0.156 3.844 10 H 0.067 0.933 11 C 0.023 3.977 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.269 1.269 20 N -0.730 5.730 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.145 0.855 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.005 0.995 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 4.936 7.562 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C -0.095 4.095 4 C -0.224 4.224 5 C 0.071 3.929 6 C -0.198 4.198 7 C -0.087 4.087 8 C -0.114 4.114 9 C 0.050 3.950 10 H 0.085 0.915 11 C -0.015 4.015 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.194 1.194 20 N -0.359 5.359 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.163 0.837 25 H 0.141 0.859 26 H 0.151 0.849 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.023 0.977 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.798 4.741 7.406 15.528 hybrid contribution 1.670 0.374 -0.476 1.776 sum -11.129 5.115 6.930 14.073 Atomic orbital electron populations 1.20624 0.89059 1.03043 1.02526 1.19893 0.97334 0.92267 1.06587 1.20907 0.92427 0.98605 0.97573 1.20542 0.94911 0.95309 1.11596 1.18830 0.84850 0.95193 0.94041 1.20173 0.94526 0.94160 1.10921 1.20448 0.91141 0.98821 0.98319 1.21092 0.91293 0.96281 1.02783 1.21389 0.95127 0.80294 0.98169 0.91508 1.19390 0.94350 0.95291 0.92472 1.21505 0.98149 1.32880 1.04673 0.92064 1.25946 1.03156 0.95592 0.94978 1.70093 1.37200 1.40787 1.09223 0.85518 0.79030 0.78945 0.77629 1.19094 1.21100 1.19378 1.44948 1.03074 1.07163 1.80747 0.90875 0.90917 0.91472 0.83695 0.85938 0.84943 0.91096 0.88722 0.97682 0.99527 0.92829 0.75366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 10.02 71.24 0.71 -0.99 16 2 C -0.16 -4.09 5.88 -19.85 -0.12 -4.21 16 3 C -0.08 -2.02 9.68 22.18 0.21 -1.81 16 4 C -0.20 -6.29 10.07 22.52 0.23 -6.07 16 5 C 0.18 6.50 7.03 38.34 0.27 6.77 16 6 C -0.19 -6.81 6.23 -19.63 -0.12 -6.93 16 7 C -0.07 -2.02 9.70 22.25 0.22 -1.80 16 8 C -0.08 -2.81 6.59 30.27 0.20 -2.61 16 9 C 0.16 6.57 3.61 45.24 0.16 6.73 16 10 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 11 C 0.02 1.21 4.46 29.85 0.13 1.34 16 12 C -0.53 -29.76 8.96 25.60 0.23 -29.53 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.07 5.46 84.66 0.46 0.53 16 15 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 16 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 N -0.73 -29.16 6.01 -317.38 -1.91 -31.07 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 23 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 24 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 25 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 26 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 27 H 0.07 2.68 7.70 -2.39 -0.02 2.66 16 28 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.41 15.86 8.96 -92.71 -0.83 15.03 16 Total: -1.00 -64.55 271.60 3.26 -61.28 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.27 Total: 18.89 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 2.59 Total: -38.57 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -1.62 Total: -87.66 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -64.55 3.26 -61.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.351 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds