Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47646 * 2 1 4 4 C 1.50704 * 109.47011 * 119.99624 * 2 1 3 5 5 H 1.08000 * 119.99934 * 28.23344 * 4 2 1 6 6 C 1.37876 * 120.00022 * 208.22394 * 4 2 1 7 7 N 1.31510 * 119.99979 * 353.34589 * 6 4 2 8 8 Si 1.86803 * 119.99773 * 173.33870 * 6 4 2 9 9 H 1.48496 * 109.47277 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46917 * 240.00463 * 8 6 4 11 11 H 1.48505 * 109.46818 * 120.00499 * 8 6 4 12 12 C 1.53000 * 109.47551 * 239.99781 * 2 1 3 13 13 H 1.08996 * 110.26949 * 187.06758 * 12 2 1 14 14 C 1.53751 * 110.30014 * 65.00114 * 12 2 1 15 15 C 1.51221 * 104.53426 * 241.07520 * 14 12 2 16 16 C 1.38169 * 130.98450 * 180.02562 * 15 14 12 17 17 C 1.38230 * 120.15186 * 179.97438 * 16 15 14 18 18 C 1.38302 * 119.83664 * 0.04046 * 17 16 15 19 19 C 1.37828 * 120.22407 * 359.97438 * 18 17 16 20 20 C 1.38589 * 108.54347 * 359.97438 * 15 14 12 21 21 N 1.39586 * 111.65168 * 0.02562 * 20 15 14 22 22 H 1.09008 * 109.46958 * 61.12045 * 1 2 3 23 23 H 1.09004 * 109.47136 * 181.11389 * 1 2 3 24 24 H 1.08991 * 109.47441 * 301.12065 * 1 2 3 25 25 H 0.96995 * 120.00667 * 354.57915 * 7 6 4 26 26 H 1.08998 * 110.42024 * 359.83345 * 14 12 2 27 27 H 1.08996 * 110.42333 * 122.30628 * 14 12 2 28 28 H 1.07999 * 119.92777 * 359.97438 * 16 15 14 29 29 H 1.07999 * 120.08694 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.89188 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.85825 * 179.97438 * 19 18 17 32 32 H 0.96992 * 124.96123 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 1.4353 -1.4854 1.6881 6 6 3.2540 -0.3709 1.7721 7 7 4.0388 0.4771 1.1441 8 14 3.7943 -1.1156 3.3978 9 1 2.7390 -2.0335 3.8969 10 1 4.0175 -0.0321 4.3886 11 1 5.0560 -1.8733 3.2001 12 6 2.0401 -0.7213 -1.2492 13 1 3.1226 -0.8391 -1.2016 14 6 1.6434 0.0575 -2.5142 15 6 0.7700 -0.9013 -3.2918 16 6 0.1251 -0.7588 -4.5054 17 6 -0.6283 -1.7984 -5.0176 18 6 -0.7364 -2.9828 -4.3117 19 6 -0.0953 -3.1296 -3.1004 20 6 0.6693 -2.0844 -2.5771 21 7 1.3902 -2.0278 -1.3831 22 1 -0.3633 0.4964 -0.8999 23 1 -0.3633 -1.0275 0.0200 24 1 -0.3634 0.5311 0.8797 25 1 3.7948 0.8033 0.2638 26 1 1.0821 0.9534 -2.2488 27 1 2.5291 0.3198 -3.0927 28 1 0.2099 0.1669 -5.0552 29 1 -1.1316 -1.6860 -5.9665 30 1 -1.3252 -3.7954 -4.7108 31 1 -0.1841 -4.0569 -2.5540 32 1 1.4525 -2.7483 -0.7368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261056345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = 15.746786 kcal Electronic energy + Delta-G solvation = -14462.341024 eV Core-core repulsion = 12193.845137 eV Total energy + Delta-G solvation = -2268.495888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92077 -36.52849 -33.57344 -31.52307 -30.62311 -28.36900 -27.57243 -24.68323 -22.87774 -21.55924 -20.72876 -19.42803 -16.83809 -16.78628 -15.26626 -15.02343 -14.43310 -13.83060 -13.72054 -13.37462 -12.94063 -12.34538 -12.17323 -11.93331 -11.62328 -11.31598 -11.09510 -10.84919 -10.60643 -10.43178 -10.39449 -10.18825 -9.64538 -9.38782 -8.56251 -8.39379 -8.33958 -6.67092 -6.42018 -4.14401 1.83561 2.08452 3.39489 3.41601 3.55395 4.17274 4.29450 4.46838 5.13398 5.27767 5.35977 5.45334 5.57287 5.85720 5.94183 5.97227 6.00702 6.32203 6.38056 6.42915 6.49772 6.57782 6.76596 6.89396 6.97050 7.01696 7.05871 7.21708 7.32868 7.44764 7.86569 8.18283 8.37172 8.60718 8.80779 9.57057 10.95373 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.052865 B = 0.007762 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.526785 B = 3606.629162 C = 3788.185771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.016 3.984 3 H 0.040 0.960 4 C -0.592 4.592 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 1.068 2.932 9 H -0.290 1.290 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.152 3.848 13 H 0.068 0.932 14 C -0.085 4.085 15 C -0.176 4.176 16 C -0.063 4.063 17 C -0.197 4.197 18 C -0.077 4.077 19 C -0.201 4.201 20 C 0.214 3.786 21 N -0.713 5.713 22 H 0.026 0.974 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.271 0.729 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 -3.744 -8.330 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.004 4.004 3 H 0.058 0.942 4 C -0.630 4.630 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.546 5.546 8 Si 0.897 3.103 9 H -0.216 1.216 10 H -0.212 1.212 11 H -0.215 1.215 12 C 0.047 3.953 13 H 0.086 0.914 14 C -0.123 4.123 15 C -0.181 4.181 16 C -0.082 4.082 17 C -0.217 4.217 18 C -0.095 4.095 19 C -0.225 4.225 20 C 0.106 3.894 21 N -0.339 5.339 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.894 -3.601 -7.030 9.292 hybrid contribution -1.198 -0.411 -0.834 1.517 sum -6.092 -4.012 -7.864 10.726 Atomic orbital electron populations 1.21661 0.98321 0.99844 0.98316 1.19277 0.92002 0.96288 0.92821 0.94150 1.21945 1.05668 1.23121 1.12218 0.93379 1.25808 0.93371 0.95470 1.03715 1.70740 1.38716 1.29832 1.15357 0.83556 0.75468 0.75946 0.75308 1.21612 1.21221 1.21536 1.21827 0.96474 0.82097 0.94921 0.91397 1.21246 0.97864 0.97915 0.95260 1.20014 1.04934 0.96265 0.96915 1.20265 0.95785 0.98213 0.93922 1.20615 1.05181 0.94656 1.01279 1.20605 0.97879 0.97061 0.93982 1.20249 1.04851 0.98577 0.98799 1.18541 0.90193 0.93726 0.86985 1.45029 1.52505 1.17083 1.19263 0.95542 0.94157 0.94312 0.91801 0.90441 0.91285 0.87080 0.87008 0.86894 0.87202 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.71 37.16 0.32 -2.36 16 2 C 0.02 0.37 1.63 -91.77 -0.15 0.22 16 3 H 0.04 1.04 6.99 -51.93 -0.36 0.67 16 4 C -0.59 -15.66 8.15 -34.44 -0.28 -15.94 16 5 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 6 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 7 N -0.91 -26.25 13.55 55.43 0.75 -25.50 16 8 Si 1.07 24.54 29.91 -169.99 -5.08 19.45 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.15 3.26 3.22 -67.52 -0.22 3.04 16 13 H 0.07 1.62 7.84 -51.93 -0.41 1.21 16 14 C -0.09 -1.60 6.06 -27.24 -0.16 -1.77 16 15 C -0.18 -3.19 6.23 -104.26 -0.65 -3.83 16 16 C -0.06 -0.99 10.03 -39.61 -0.40 -1.39 16 17 C -0.20 -2.84 10.06 -39.56 -0.40 -3.24 16 18 C -0.08 -1.11 10.02 -39.71 -0.40 -1.51 16 19 C -0.20 -3.28 10.07 -39.20 -0.39 -3.68 16 20 C 0.21 3.96 7.02 -83.66 -0.59 3.37 16 21 N -0.71 -14.12 4.94 -51.67 -0.26 -14.38 16 22 H 0.03 0.52 6.79 -51.92 -0.35 0.17 16 23 H 0.04 0.87 7.47 -51.93 -0.39 0.48 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.27 7.68 6.49 -40.82 -0.26 7.41 16 26 H 0.08 1.43 6.73 -51.93 -0.35 1.08 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.41 7.95 8.96 -40.82 -0.37 7.58 16 LS Contribution 263.99 15.07 3.98 3.98 Total: -1.00 -28.28 263.99 -8.26 -36.54 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.23 Total: 6.50 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -3.41 Total: -26.60 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.50 Total: -39.87 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.28 -8.26 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261056345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.284 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds