Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38347 * 120.05889 * 2 1 4 4 C 1.37875 * 120.08132 * 179.97438 * 3 2 1 5 5 C 1.39013 * 120.47696 * 359.51554 * 4 3 2 6 6 C 1.39351 * 119.09311 * 0.90329 * 5 4 3 7 7 C 1.50706 * 119.90432 * 179.47466 * 6 5 4 8 8 C 1.37952 * 120.19652 * 359.20219 * 6 5 4 9 9 N 1.40037 * 110.94500 * 180.57381 * 5 4 3 10 10 C 1.47912 * 107.93866 * 341.85847 * 9 5 4 11 11 H 1.09002 * 110.77671 * 145.40951 * 10 9 5 12 12 C 1.50697 * 110.94087 * 268.76607 * 10 9 5 13 13 H 1.08003 * 120.00193 * 113.30240 * 12 10 9 14 14 C 1.37869 * 120.00082 * 293.30341 * 12 10 9 15 15 N 1.31514 * 120.00384 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 120.00211 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46891 * 89.99933 * 16 14 12 18 18 H 1.48495 * 109.47191 * 209.99756 * 16 14 12 19 19 H 1.48498 * 109.46921 * 330.00401 * 16 14 12 20 20 C 1.51574 * 131.56990 * 179.56966 * 4 3 2 21 21 H 1.08999 * 109.47441 * 270.02105 * 1 2 3 22 22 H 1.09000 * 109.47479 * 30.02728 * 1 2 3 23 23 H 1.09007 * 109.47396 * 150.02370 * 1 2 3 24 24 H 1.07996 * 119.95684 * 359.94184 * 3 2 1 25 25 H 1.08999 * 109.47015 * 269.72931 * 7 6 5 26 26 H 1.09000 * 109.46646 * 29.72083 * 7 6 5 27 27 H 1.09000 * 109.47248 * 149.72801 * 7 6 5 28 28 H 1.08002 * 119.86911 * 180.26011 * 8 6 5 29 29 H 1.00901 * 110.78782 * 103.58152 * 9 5 4 30 30 H 0.96998 * 120.00869 * 179.97438 * 15 14 12 31 31 H 1.09000 * 110.73751 * 314.37183 * 20 4 3 32 32 H 1.08995 * 110.73712 * 77.51262 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1974 0.0000 4 6 3.5787 1.1980 0.0005 5 6 4.2842 0.0002 0.0112 6 6 3.5790 -1.2017 0.0022 7 6 4.3256 -2.5108 0.0015 8 6 2.1995 -1.1967 -0.0005 9 7 5.6651 0.2327 0.0228 10 6 5.8963 1.6255 -0.4183 11 1 6.7490 2.0599 0.1036 12 6 6.0951 1.6918 -1.9106 13 1 5.3641 2.1886 -2.5313 14 6 7.2103 1.1184 -2.4836 15 7 8.1008 0.5139 -1.7279 16 14 7.4565 1.2000 -4.3336 17 1 8.2170 2.4282 -4.6780 18 1 8.2143 0.0055 -4.7853 19 1 6.1339 1.2314 -5.0080 20 6 4.5840 2.3323 -0.0078 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6602 2.1328 -0.0009 25 1 4.5075 -2.8248 -1.0263 26 1 5.2777 -2.3863 0.5173 27 1 3.7314 -3.2681 0.5130 28 1 1.6583 -2.1313 -0.0033 29 1 6.0467 0.0770 0.9438 30 1 8.8853 0.1101 -2.1310 31 1 4.3067 3.0883 -0.7425 32 1 4.6746 2.7750 0.9840 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = 2.965767 kcal Electronic energy + Delta-G solvation = -14386.993537 eV Core-core repulsion = 12117.943423 eV Total energy + Delta-G solvation = -2269.050114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22270 -37.72268 -34.54355 -34.12027 -31.56374 -30.11243 -28.07504 -27.15183 -26.13210 -22.53886 -21.25223 -21.12236 -18.69652 -17.59302 -16.68115 -16.23777 -15.81395 -15.23214 -14.60725 -14.56400 -14.10467 -13.98912 -13.85859 -13.51258 -13.27198 -13.08468 -12.79860 -12.66568 -12.48491 -12.12968 -12.02418 -11.72769 -11.55517 -11.22495 -10.60029 -10.06301 -9.37397 -8.32535 -8.03791 -6.25140 0.60019 0.63922 1.37912 1.39755 1.49139 2.41809 2.90443 3.07529 3.58408 3.92580 4.09640 4.12490 4.41875 4.54068 4.60852 4.61870 4.71666 4.80948 4.86033 4.90288 4.95668 5.09520 5.14633 5.27820 5.34602 5.48148 5.65280 5.71735 5.80999 5.89136 6.14535 6.22106 6.55434 6.90804 6.93416 7.46133 8.97418 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032752 B = 0.009213 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.708145 B = 3038.300422 C = 3187.849852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.159 4.159 5 C 0.091 3.909 6 C -0.117 4.117 7 C -0.092 4.092 8 C -0.109 4.109 9 N -0.618 5.618 10 C 0.213 3.787 11 H 0.028 0.972 12 C -0.532 4.532 13 H 0.045 0.955 14 C 0.035 3.965 15 N -0.893 5.893 16 Si 0.948 3.052 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.277 1.277 20 C -0.099 4.099 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.128 0.872 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.327 0.673 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 -2.545 4.471 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.162 4.162 5 C -0.008 4.008 6 C -0.119 4.119 7 C -0.149 4.149 8 C -0.128 4.128 9 N -0.245 5.245 10 C 0.107 3.893 11 H 0.046 0.954 12 C -0.571 4.571 13 H 0.063 0.937 14 C -0.168 4.168 15 N -0.530 5.530 16 Si 0.774 3.226 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.137 4.137 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.146 0.854 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.498 -2.941 3.886 12.488 hybrid contribution 0.544 0.626 -0.359 0.904 sum -10.954 -2.315 3.527 11.738 Atomic orbital electron populations 1.20683 0.88581 1.03260 1.02897 1.20043 0.97516 0.92081 1.02528 1.20453 0.91661 0.98699 1.01747 1.21309 0.94936 0.95941 1.04039 1.19945 0.89811 0.93795 0.97262 1.19660 0.94139 0.93741 1.04400 1.20524 0.99418 0.93457 1.01519 1.20888 0.91963 0.98666 1.01238 1.58641 1.08829 1.29503 1.27524 1.19941 0.91561 0.82581 0.95206 0.95419 1.21164 1.06439 1.36959 0.92492 0.93696 1.25645 0.95465 0.93987 1.01701 1.70084 1.10838 1.35682 1.36412 0.85732 0.77924 0.77810 0.81119 1.19439 1.20866 1.20163 1.21737 0.95051 0.96442 1.00509 0.90288 0.91330 0.90560 0.85448 0.92774 0.93054 0.89605 0.83555 0.84757 0.93184 0.91227 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.02 71.23 0.71 -1.32 16 2 C -0.12 -3.68 5.88 -19.83 -0.12 -3.79 16 3 C -0.11 -3.76 9.69 22.21 0.22 -3.54 16 4 C -0.16 -6.71 6.22 -19.49 -0.12 -6.83 16 5 C 0.09 4.07 6.43 38.28 0.25 4.32 16 6 C -0.12 -4.46 5.90 -19.66 -0.12 -4.58 16 7 C -0.09 -3.12 9.97 71.24 0.71 -2.41 16 8 C -0.11 -3.46 9.33 22.21 0.21 -3.25 16 9 N -0.62 -30.44 6.46 -316.26 -2.04 -32.49 16 10 C 0.21 11.00 3.23 44.52 0.14 11.14 16 11 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 12 C -0.53 -30.46 8.71 25.60 0.22 -30.24 16 13 H 0.04 2.59 7.62 -2.91 -0.02 2.57 16 14 C 0.03 1.98 5.44 84.65 0.46 2.44 16 15 N -0.89 -52.68 13.12 21.44 0.28 -52.40 16 16 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 C -0.10 -4.30 6.56 30.67 0.20 -4.10 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 23 H 0.08 1.35 8.09 -2.38 -0.02 1.34 16 24 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.85 7.96 -2.39 -0.02 1.83 16 27 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 28 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.33 15.05 8.85 -89.69 -0.79 14.26 16 30 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.07 3.01 7.78 -2.39 -0.02 2.99 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -64.48 271.27 3.35 -61.14 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.31 Total: 18.79 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 2.77 Total: -42.16 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.76 Total: -84.89 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.48 3.35 -61.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.101 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds