Wall clock time and date at job start Mon Mar 30 2020 03:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46974 * 2 1 4 4 C 1.50695 * 109.47209 * 120.00147 * 2 1 3 5 5 H 1.08001 * 120.00263 * 114.53352 * 4 2 1 6 6 C 1.37878 * 120.00185 * 294.53237 * 4 2 1 7 7 N 1.31514 * 120.00078 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99886 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47041 * 89.99993 * 8 6 4 10 10 H 1.48499 * 109.47213 * 209.99974 * 8 6 4 11 11 H 1.48504 * 109.47200 * 330.00249 * 8 6 4 12 12 C 1.53001 * 109.47358 * 240.00359 * 2 1 3 13 13 C 1.50703 * 115.54933 * 149.87769 * 12 2 1 14 14 C 1.38229 * 119.62001 * 313.80728 * 13 12 2 15 15 C 1.38627 * 119.16164 * 179.75765 * 14 13 12 16 16 C 1.38672 * 118.41907 * 0.50882 * 15 14 13 17 17 C 1.38189 * 119.16524 * 359.72900 * 16 15 14 18 18 N 1.31858 * 119.61502 * 134.07947 * 13 12 2 19 19 C 1.53005 * 117.49902 * 4.17096 * 12 2 1 20 20 C 1.52996 * 117.49951 * 295.54883 * 12 2 1 21 21 H 1.09007 * 109.47231 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47535 * 299.99681 * 1 2 3 23 23 H 1.09002 * 109.47270 * 60.00165 * 1 2 3 24 24 H 0.97004 * 120.00200 * 179.97438 * 7 6 4 25 25 H 1.08005 * 120.41730 * 359.97438 * 14 13 12 26 26 H 1.07995 * 120.79181 * 180.21440 * 15 14 13 27 27 H 1.07998 * 120.42037 * 179.71823 * 16 15 14 28 28 H 1.07993 * 119.61838 * 180.02562 * 17 16 15 29 29 H 1.08999 * 117.49431 * 359.97438 * 19 12 2 30 30 H 1.08989 * 117.49908 * 145.02173 * 19 12 2 31 31 H 1.08995 * 117.50303 * 214.98079 * 20 12 2 32 32 H 1.09007 * 117.50036 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5784 -1.6371 1.1338 6 6 1.7947 -0.1774 2.4796 7 7 2.2326 -0.7976 3.5534 8 14 0.8507 1.4259 2.6467 9 1 -0.6006 1.1354 2.7678 10 1 1.3136 2.1488 3.8585 11 1 1.0886 2.2678 1.4468 12 6 2.0400 -0.7212 -1.2493 13 6 3.3655 -0.2406 -1.7816 14 6 3.5984 1.1158 -1.9112 15 6 4.8228 1.5475 -2.3970 16 6 5.7676 0.5943 -2.7460 17 6 5.4615 -0.7446 -2.5937 18 7 4.2876 -1.1189 -2.1233 19 6 0.9994 -1.1943 -2.2663 20 6 1.7237 -2.2121 -1.3829 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.0658 -0.4224 4.4322 25 1 2.8373 1.8302 -1.6340 26 1 5.0342 2.6010 -2.5057 27 1 6.7305 0.8945 -3.1322 28 1 6.1920 -1.4931 -2.8628 29 1 -0.0486 -0.9921 -2.0451 30 1 1.2732 -1.1579 -3.3206 31 1 2.4740 -2.8454 -1.8562 32 1 1.1526 -2.6794 -0.5806 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:46 Heat of formation + Delta-G solvation = 40.243098 kcal Electronic energy + Delta-G solvation = -14498.446458 eV Core-core repulsion = 12231.012810 eV Total energy + Delta-G solvation = -2267.433648 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29464 -38.93521 -34.97332 -33.32081 -32.28838 -31.86311 -27.28661 -25.69568 -24.31407 -23.34074 -22.77824 -19.97866 -18.67111 -17.87728 -16.98020 -16.80116 -16.16967 -15.87664 -15.15071 -14.66705 -14.47382 -14.29099 -13.97627 -13.60145 -13.05067 -12.94397 -12.65203 -12.31235 -11.91385 -11.90542 -11.48084 -11.37901 -11.08212 -10.73038 -10.70785 -10.56961 -10.16213 -9.57005 -8.24058 -6.26261 0.28944 0.48326 1.32217 1.36360 1.46911 2.35839 2.83286 3.10705 3.13332 3.53869 3.85609 4.05216 4.12412 4.24213 4.35264 4.38469 4.44687 4.64530 4.75542 4.77193 4.85204 4.91752 5.08382 5.16341 5.23137 5.33254 5.36799 5.38701 5.45549 5.70313 5.72791 5.95299 6.39800 6.80564 7.22392 7.37065 8.93394 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.010566 C = 0.009597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.716418 B = 2649.267902 C = 2917.024593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 H 0.032 0.968 4 C -0.497 4.497 5 H 0.026 0.974 6 C 0.005 3.995 7 N -0.956 5.956 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.301 1.301 11 H -0.240 1.240 12 C -0.079 4.079 13 C 0.162 3.838 14 C -0.181 4.181 15 C -0.076 4.076 16 C -0.181 4.181 17 C 0.081 3.919 18 N -0.517 5.517 19 C -0.146 4.146 20 C -0.156 4.156 21 H 0.052 0.948 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.262 0.738 25 H 0.136 0.864 26 H 0.166 0.834 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 6.099 -14.578 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.044 0.956 6 C -0.190 4.190 7 N -0.598 5.598 8 Si 0.770 3.230 9 H -0.190 1.190 10 H -0.228 1.228 11 H -0.163 1.163 12 C -0.080 4.080 13 C 0.025 3.975 14 C -0.201 4.201 15 C -0.101 4.101 16 C -0.200 4.200 17 C -0.076 4.076 18 N -0.227 5.227 19 C -0.183 4.183 20 C -0.193 4.193 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.154 0.846 26 H 0.183 0.817 27 H 0.187 0.813 28 H 0.193 0.807 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.660 5.213 -14.321 15.331 hybrid contribution 0.051 1.003 0.916 1.359 sum 1.711 6.216 -13.405 14.875 Atomic orbital electron populations 1.22179 0.96976 1.01195 0.99924 1.18646 0.93038 0.95133 0.90384 0.94982 1.21265 1.33774 1.07815 0.90685 0.95560 1.25904 0.96849 1.00885 0.95402 1.70078 1.49208 1.41830 0.98654 0.85884 0.79079 0.80190 0.77824 1.19033 1.22846 1.16344 1.20073 0.92066 0.98122 0.97773 1.20433 0.93608 0.90283 0.93140 1.22071 0.99818 0.96290 1.01908 1.21961 0.91948 1.01903 0.94325 1.22448 1.01855 0.93563 1.02123 1.23262 0.93180 0.96527 0.94627 1.67359 1.02945 1.40418 1.11928 1.23254 0.97657 1.01995 0.95402 1.22662 1.02864 0.91881 1.01907 0.92905 0.95024 0.91060 0.92876 0.84578 0.81696 0.81306 0.80748 0.86528 0.88559 0.89242 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.84 7.35 71.98 0.53 -5.31 16 2 C 0.05 2.17 1.90 -11.54 -0.02 2.15 16 3 H 0.03 1.48 5.28 -2.39 -0.01 1.47 16 4 C -0.50 -28.85 8.67 25.60 0.22 -28.62 16 5 H 0.03 1.74 7.64 -2.91 -0.02 1.72 16 6 C 0.01 0.31 5.45 84.65 0.46 0.77 16 7 N -0.96 -61.50 13.96 21.45 0.30 -61.20 16 8 Si 0.94 44.90 24.67 68.60 1.69 46.59 16 9 H -0.26 -11.92 6.88 99.48 0.68 -11.24 16 10 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.24 -10.32 6.39 99.48 0.64 -9.69 16 12 C -0.08 -3.26 1.93 -52.93 -0.10 -3.37 16 13 C 0.16 6.37 6.21 42.55 0.26 6.64 16 14 C -0.18 -6.07 9.17 22.36 0.21 -5.87 16 15 C -0.08 -1.96 10.18 22.47 0.23 -1.73 16 16 C -0.18 -4.34 10.11 22.36 0.23 -4.11 16 17 C 0.08 2.39 11.18 84.67 0.95 3.34 16 18 N -0.52 -19.88 9.36 -183.88 -1.72 -21.60 16 19 C -0.15 -4.84 9.21 30.60 0.28 -4.56 16 20 C -0.16 -6.27 8.71 30.59 0.27 -6.01 16 21 H 0.05 2.10 7.17 -2.38 -0.02 2.08 16 22 H 0.03 1.31 4.01 -2.39 -0.01 1.30 16 23 H 0.07 2.29 7.20 -2.39 -0.02 2.28 16 24 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 25 H 0.14 4.31 7.16 -2.91 -0.02 4.29 16 26 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 27 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.12 3.46 5.82 -2.39 -0.01 3.45 16 30 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.09 3.59 7.59 -2.39 -0.02 3.57 16 32 H 0.08 3.42 7.78 -2.38 -0.02 3.40 16 Total: -1.00 -71.44 258.70 4.79 -66.65 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.02 Total: 16.26 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 3.51 Total: -46.69 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.42 Total: -82.80 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.69 Total: 46.59 kcal Total: -71.44 4.79 -66.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.889 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds