Wall clock time and date at job start Mon Mar 30 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47380 * 2 1 4 4 C 1.50709 * 109.46977 * 240.00162 * 2 1 3 5 5 H 1.08002 * 120.00080 * 275.18177 * 4 2 1 6 6 C 1.37878 * 119.99691 * 95.18775 * 4 2 1 7 7 N 1.31516 * 119.99719 * 177.86095 * 6 4 2 8 8 Si 1.86799 * 120.00339 * 357.85490 * 6 4 2 9 9 H 1.48499 * 109.46832 * 86.07773 * 8 6 4 10 10 H 1.48496 * 109.47199 * 206.08153 * 8 6 4 11 11 H 1.48501 * 109.46953 * 326.08228 * 8 6 4 12 12 C 1.52996 * 109.47412 * 120.00321 * 2 1 3 13 13 C 1.50699 * 115.55121 * 54.65523 * 12 2 1 14 14 C 1.38225 * 119.62068 * 260.36436 * 13 12 2 15 15 C 1.38627 * 119.16544 * 180.02562 * 14 13 12 16 16 C 1.38675 * 118.42076 * 0.02562 * 15 14 13 17 17 C 1.38181 * 119.16059 * 359.97438 * 16 15 14 18 18 N 1.31855 * 119.62102 * 80.38173 * 13 12 2 19 19 C 1.52997 * 117.52058 * 200.36161 * 12 2 1 20 20 C 1.53000 * 60.00158 * 107.47719 * 19 12 2 21 21 H 1.09001 * 109.47392 * 54.60653 * 1 2 3 22 22 H 1.09005 * 109.47000 * 174.60180 * 1 2 3 23 23 H 1.08996 * 109.47207 * 294.60383 * 1 2 3 24 24 H 0.96993 * 119.99967 * 179.97438 * 7 6 4 25 25 H 1.08003 * 120.41734 * 0.04128 * 14 13 12 26 26 H 1.08003 * 120.79440 * 179.97438 * 15 14 13 27 27 H 1.07997 * 120.42342 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.62050 * 179.97438 * 17 16 15 29 29 H 1.09001 * 117.49839 * 214.96600 * 19 12 2 30 30 H 1.08999 * 117.49926 * 359.97438 * 19 12 2 31 31 H 1.08992 * 117.49918 * 252.50662 * 20 19 12 32 32 H 1.09000 * 117.51554 * 107.47930 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1326 -1.7858 -1.2302 6 6 2.3638 0.0125 -2.3568 7 7 2.8419 -0.6030 -3.4162 8 14 2.1339 1.8662 -2.3782 9 1 3.3373 2.5208 -1.8051 10 1 1.9396 2.3248 -3.7771 11 1 0.9419 2.2264 -1.5691 12 6 2.0400 -0.7213 1.2491 13 6 1.5152 -2.1192 1.4524 14 6 0.4740 -2.3365 2.3352 15 6 -0.0010 -3.6263 2.5153 16 6 0.5919 -4.6543 1.7978 17 6 1.6289 -4.3607 0.9329 18 7 2.0546 -3.1211 0.7862 19 6 3.4750 -0.4337 1.6952 20 6 2.2981 0.1248 2.4975 21 1 -0.3634 0.5952 -0.8377 22 1 -0.3633 -1.0232 -0.0967 23 1 -0.3633 0.4278 0.9343 24 1 3.0748 -0.0945 -4.2086 25 1 0.0360 -1.5117 2.8777 26 1 -0.8131 -3.8261 3.1987 27 1 0.2477 -5.6713 1.9134 28 1 2.0963 -5.1556 0.3707 29 1 4.0395 -1.2556 2.1356 30 1 4.0562 0.2693 1.0984 31 1 2.1049 1.1953 2.4288 32 1 2.0879 -0.3296 3.4658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:48 Heat of formation + Delta-G solvation = 55.797644 kcal Electronic energy + Delta-G solvation = -14572.850675 eV Core-core repulsion = 12306.091523 eV Total energy + Delta-G solvation = -2266.759152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92023 -37.14042 -32.93183 -31.95721 -30.76500 -30.32925 -25.13129 -23.80622 -23.09761 -21.52174 -21.47713 -18.68151 -16.87232 -16.09053 -15.55489 -15.14224 -14.58582 -13.94616 -13.89462 -12.96355 -12.80837 -12.40150 -12.36476 -11.95338 -11.46538 -11.33465 -10.90777 -10.80520 -10.56227 -10.11503 -9.86882 -9.55923 -9.37629 -9.31987 -8.64532 -8.56064 -8.46415 -8.33607 -5.91384 -3.87302 1.59329 1.76341 3.33918 3.42867 3.44057 4.30522 4.39126 4.52830 4.87102 5.14793 5.22937 5.36433 5.43430 5.51979 5.56980 5.80316 5.87017 6.06152 6.12534 6.23528 6.41803 6.47278 6.52707 6.54039 6.59235 6.77000 6.87025 6.95424 7.14811 7.24478 7.49998 7.88248 8.66263 8.74083 9.28515 9.71495 11.22357 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032801 B = 0.010677 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.440566 B = 2621.867789 C = 2921.339325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.051 3.949 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.093 0.907 6 C 0.068 3.932 7 N -0.903 5.903 8 Si 0.866 3.134 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.265 1.265 12 C -0.047 4.047 13 C 0.200 3.800 14 C -0.174 4.174 15 C -0.083 4.083 16 C -0.194 4.194 17 C 0.098 3.902 18 N -0.451 5.451 19 C -0.150 4.150 20 C -0.191 4.191 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.023 0.977 24 H 0.260 0.740 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -2.951 12.245 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.110 0.890 6 C -0.132 4.132 7 N -0.543 5.543 8 Si 0.694 3.306 9 H -0.204 1.204 10 H -0.218 1.218 11 H -0.190 1.190 12 C -0.048 4.048 13 C 0.063 3.937 14 C -0.194 4.194 15 C -0.109 4.109 16 C -0.214 4.214 17 C -0.059 4.059 18 N -0.158 5.158 19 C -0.187 4.187 20 C -0.229 4.229 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.469 -2.765 11.464 12.293 hybrid contribution -0.865 0.752 0.347 1.198 sum -4.335 -2.012 11.811 12.741 Atomic orbital electron populations 1.22001 0.98960 1.00207 0.98270 1.18703 0.91953 0.94591 0.91606 0.94780 1.21160 1.41293 0.96662 0.94082 0.88955 1.25024 0.94996 0.97408 0.95808 1.69903 1.44614 1.35573 1.04163 0.87054 0.79082 0.87489 0.76978 1.20448 1.21770 1.19026 1.20188 0.98733 0.89990 0.95925 1.20320 0.90818 0.93359 0.89242 1.21902 0.98928 0.97397 1.01216 1.21423 0.98549 0.92818 0.98128 1.22015 0.99476 0.99872 1.00086 1.22809 0.93782 0.94135 0.95179 1.67610 1.28771 0.99062 1.20393 1.22771 0.91151 1.02554 1.02245 1.23158 1.04980 0.99540 0.95188 0.93798 0.93909 0.95838 0.93004 0.85398 0.85663 0.85665 0.83349 0.89799 0.88547 0.88941 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.65 37.16 0.32 -2.65 16 2 C 0.05 1.20 1.73 -91.77 -0.16 1.04 16 3 H 0.03 0.81 5.54 -51.93 -0.29 0.53 16 4 C -0.49 -14.00 8.65 -34.44 -0.30 -14.30 16 5 H 0.09 2.88 6.69 -52.49 -0.35 2.53 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 8 Si 0.87 21.77 26.53 -169.99 -4.51 17.26 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.27 -6.35 6.37 56.52 0.36 -5.99 16 12 C -0.05 -0.97 1.32 -155.66 -0.20 -1.18 16 13 C 0.20 3.98 4.73 -82.59 -0.39 3.59 16 14 C -0.17 -2.86 9.20 -39.44 -0.36 -3.22 16 15 C -0.08 -1.17 10.18 -39.28 -0.40 -1.57 16 16 C -0.19 -2.76 10.11 -39.44 -0.40 -3.16 16 17 C 0.10 1.69 11.18 -17.55 -0.20 1.49 16 18 N -0.45 -9.52 8.98 -9.48 -0.09 -9.60 16 19 C -0.15 -2.87 9.96 -26.73 -0.27 -3.14 16 20 C -0.19 -3.20 9.52 -26.73 -0.25 -3.45 16 21 H 0.04 0.98 7.18 -51.93 -0.37 0.60 16 22 H 0.04 0.95 7.60 -51.93 -0.39 0.55 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.13 1.85 7.92 -52.48 -0.42 1.43 16 26 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.22 7.99 -51.93 -0.41 0.81 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -31.98 268.73 -6.85 -38.83 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.37 Total: 1.60 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -2.71 Total: -24.68 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.69 Total: -37.06 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.51 Total: 17.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.98 -6.85 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.627 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds