Wall clock time and date at job start Mon Mar 30 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47380 * 2 1 4 4 C 1.50709 * 109.46977 * 240.00162 * 2 1 3 5 5 H 1.08002 * 120.00080 * 275.18177 * 4 2 1 6 6 C 1.37878 * 119.99691 * 95.18775 * 4 2 1 7 7 N 1.31516 * 119.99719 * 177.86095 * 6 4 2 8 8 Si 1.86799 * 120.00339 * 357.85490 * 6 4 2 9 9 H 1.48499 * 109.46832 * 86.07773 * 8 6 4 10 10 H 1.48496 * 109.47199 * 206.08153 * 8 6 4 11 11 H 1.48501 * 109.46953 * 326.08228 * 8 6 4 12 12 C 1.52996 * 109.47412 * 120.00321 * 2 1 3 13 13 C 1.50699 * 115.55121 * 54.65523 * 12 2 1 14 14 C 1.38225 * 119.62068 * 260.36436 * 13 12 2 15 15 C 1.38627 * 119.16544 * 180.02562 * 14 13 12 16 16 C 1.38675 * 118.42076 * 0.02562 * 15 14 13 17 17 C 1.38181 * 119.16059 * 359.97438 * 16 15 14 18 18 N 1.31855 * 119.62102 * 80.38173 * 13 12 2 19 19 C 1.52997 * 117.52058 * 200.36161 * 12 2 1 20 20 C 1.53000 * 60.00158 * 107.47719 * 19 12 2 21 21 H 1.09001 * 109.47392 * 54.60653 * 1 2 3 22 22 H 1.09005 * 109.47000 * 174.60180 * 1 2 3 23 23 H 1.08996 * 109.47207 * 294.60383 * 1 2 3 24 24 H 0.96993 * 119.99967 * 179.97438 * 7 6 4 25 25 H 1.08003 * 120.41734 * 0.04128 * 14 13 12 26 26 H 1.08003 * 120.79440 * 179.97438 * 15 14 13 27 27 H 1.07997 * 120.42342 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.62050 * 179.97438 * 17 16 15 29 29 H 1.09001 * 117.49839 * 214.96600 * 19 12 2 30 30 H 1.08999 * 117.49926 * 359.97438 * 19 12 2 31 31 H 1.08992 * 117.49918 * 252.50662 * 20 19 12 32 32 H 1.09000 * 117.51554 * 107.47930 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1326 -1.7858 -1.2302 6 6 2.3638 0.0125 -2.3568 7 7 2.8419 -0.6030 -3.4162 8 14 2.1339 1.8662 -2.3782 9 1 3.3373 2.5208 -1.8051 10 1 1.9396 2.3248 -3.7771 11 1 0.9419 2.2264 -1.5691 12 6 2.0400 -0.7213 1.2491 13 6 1.5152 -2.1192 1.4524 14 6 0.4740 -2.3365 2.3352 15 6 -0.0010 -3.6263 2.5153 16 6 0.5919 -4.6543 1.7978 17 6 1.6289 -4.3607 0.9329 18 7 2.0546 -3.1211 0.7862 19 6 3.4750 -0.4337 1.6952 20 6 2.2981 0.1248 2.4975 21 1 -0.3634 0.5952 -0.8377 22 1 -0.3633 -1.0232 -0.0967 23 1 -0.3633 0.4278 0.9343 24 1 3.0748 -0.0945 -4.2086 25 1 0.0360 -1.5117 2.8777 26 1 -0.8131 -3.8261 3.1987 27 1 0.2477 -5.6713 1.9134 28 1 2.0963 -5.1556 0.3707 29 1 4.0395 -1.2556 2.1356 30 1 4.0562 0.2693 1.0984 31 1 2.1049 1.1953 2.4288 32 1 2.0879 -0.3296 3.4658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:48 Heat of formation + Delta-G solvation = 35.844342 kcal Electronic energy + Delta-G solvation = -14573.715915 eV Core-core repulsion = 12306.091523 eV Total energy + Delta-G solvation = -2267.624392 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23393 -38.61073 -34.94914 -33.19422 -32.66497 -31.63753 -27.14971 -25.18559 -24.38637 -23.20652 -22.85948 -20.19260 -18.93951 -17.43084 -16.89529 -16.62369 -16.07775 -15.74349 -15.34132 -14.51153 -14.29786 -14.12406 -13.82432 -13.61764 -13.14300 -12.77104 -12.66603 -12.41832 -12.25811 -11.78530 -11.67006 -11.24335 -11.10999 -10.65739 -10.59306 -10.39624 -9.93294 -9.67250 -8.15177 -6.14671 0.34975 0.58433 1.34433 1.36537 1.46718 2.41553 2.91875 3.06459 3.22848 3.56071 3.97040 4.01359 4.14453 4.24386 4.40544 4.44940 4.52001 4.68387 4.77496 4.82077 4.91547 4.98307 5.06062 5.12862 5.24787 5.33624 5.37478 5.40575 5.43552 5.73720 5.79868 5.99309 6.55060 6.99996 7.40997 7.47267 9.02536 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032801 B = 0.010677 C = 0.009582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.440566 B = 2621.867789 C = 2921.339325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.048 3.952 3 H 0.034 0.966 4 C -0.488 4.488 5 H 0.049 0.951 6 C 0.001 3.999 7 N -0.960 5.960 8 Si 0.932 3.068 9 H -0.270 1.270 10 H -0.295 1.295 11 H -0.240 1.240 12 C -0.075 4.075 13 C 0.170 3.830 14 C -0.175 4.175 15 C -0.077 4.077 16 C -0.180 4.180 17 C 0.070 3.930 18 N -0.509 5.509 19 C -0.169 4.169 20 C -0.147 4.147 21 H 0.032 0.968 22 H 0.029 0.971 23 H 0.062 0.938 24 H 0.259 0.741 25 H 0.152 0.848 26 H 0.170 0.830 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.346 -2.115 15.285 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.526 4.526 5 H 0.068 0.932 6 C -0.194 4.194 7 N -0.602 5.602 8 Si 0.756 3.244 9 H -0.196 1.196 10 H -0.221 1.221 11 H -0.163 1.163 12 C -0.076 4.076 13 C 0.032 3.968 14 C -0.194 4.194 15 C -0.102 4.102 16 C -0.199 4.199 17 C -0.086 4.086 18 N -0.218 5.218 19 C -0.207 4.207 20 C -0.184 4.184 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.170 0.830 26 H 0.188 0.812 27 H 0.182 0.818 28 H 0.173 0.827 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.606 -1.927 14.538 15.700 hybrid contribution -0.201 0.311 -0.559 0.670 sum -5.807 -1.616 13.979 15.224 Atomic orbital electron populations 1.21832 0.97215 0.99570 0.99852 1.18646 0.93261 0.94159 0.91095 0.94839 1.21443 1.39861 0.95199 0.96121 0.93243 1.25911 0.95261 1.02776 0.95414 1.70086 1.47321 1.37659 1.05170 0.85982 0.80158 0.81133 0.77084 1.19569 1.22139 1.16344 1.20089 0.99433 0.91472 0.96570 1.20357 0.92691 0.92610 0.91103 1.22158 0.97651 0.99329 1.00289 1.21957 0.98809 0.91615 0.97853 1.22405 0.97515 1.02023 0.98007 1.23133 0.95463 0.93325 0.96716 1.67457 1.31124 1.00883 1.22320 1.22746 0.91401 1.02881 1.03660 1.23232 1.00626 0.99901 0.94613 0.94851 0.95203 0.91906 0.93256 0.83023 0.81223 0.81808 0.82654 0.89888 0.90221 0.87330 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.65 71.98 0.62 -4.66 16 2 C 0.05 2.22 1.73 -11.54 -0.02 2.20 16 3 H 0.03 1.54 5.54 -2.39 -0.01 1.53 16 4 C -0.49 -28.59 8.65 25.60 0.22 -28.37 16 5 H 0.05 3.28 6.69 -2.91 -0.02 3.26 16 6 C 0.00 0.05 5.47 84.65 0.46 0.51 16 7 N -0.96 -62.93 13.96 21.45 0.30 -62.63 16 8 Si 0.93 45.45 26.53 68.60 1.82 47.27 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 11 H -0.24 -10.62 6.37 99.48 0.63 -9.98 16 12 C -0.07 -2.99 1.32 -52.93 -0.07 -3.06 16 13 C 0.17 6.59 4.73 42.55 0.20 6.79 16 14 C -0.17 -5.16 9.20 22.36 0.21 -4.95 16 15 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 16 C -0.18 -4.60 10.11 22.36 0.23 -4.37 16 17 C 0.07 2.42 11.18 84.67 0.95 3.36 16 18 N -0.51 -22.07 8.98 -183.89 -1.65 -23.72 16 19 C -0.17 -6.44 9.96 30.59 0.30 -6.14 16 20 C -0.15 -4.42 9.52 30.60 0.29 -4.13 16 21 H 0.03 1.41 7.18 -2.39 -0.02 1.39 16 22 H 0.03 1.28 7.60 -2.38 -0.02 1.26 16 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 25 H 0.15 3.63 7.92 -2.91 -0.02 3.61 16 26 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 27 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.16 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.11 2.76 7.99 -2.39 -0.02 2.74 16 Total: -1.00 -74.00 268.73 5.11 -68.89 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.02 Total: 14.62 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 3.62 Total: -44.43 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.35 Total: -86.35 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.82 Total: 47.27 kcal Total: -74.00 5.11 -68.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.735 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds