Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48497 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47310 * 300.00190 * 3 2 1 6 6 H 1.48506 * 109.46901 * 60.00243 * 3 2 1 7 7 C 1.37879 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99868 * 184.68033 * 7 2 1 9 9 C 1.50697 * 120.00064 * 4.68321 * 7 2 1 10 10 C 1.50701 * 110.02040 * 300.87583 * 9 7 2 11 11 C 1.38662 * 120.41944 * 113.21420 * 10 9 7 12 12 C 1.38639 * 118.42015 * 180.02562 * 11 10 9 13 13 C 1.38227 * 119.15627 * 359.97438 * 12 11 10 14 14 N 1.31857 * 120.76875 * 0.02562 * 13 12 11 15 15 C 1.31882 * 121.72457 * 359.97438 * 14 13 12 16 16 C 1.54272 * 110.03408 * 62.26802 * 9 7 2 17 17 C 1.54960 * 104.16368 * 95.75192 * 16 9 7 18 18 C 1.54887 * 102.77718 * 37.88713 * 17 16 9 19 19 C 1.53878 * 110.03263 * 179.48064 * 9 7 2 20 20 H 0.97001 * 119.99725 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.79346 * 359.97438 * 11 10 9 22 22 H 1.07994 * 120.42000 * 180.02562 * 12 11 10 23 23 H 1.08000 * 119.61348 * 180.02562 * 13 12 11 24 24 H 1.08001 * 119.61840 * 179.72429 * 15 14 13 25 25 H 1.09001 * 110.48889 * 214.40530 * 16 9 7 26 26 H 1.09008 * 110.48114 * 337.04351 * 16 9 7 27 27 H 1.09007 * 110.71849 * 279.57773 * 17 16 9 28 28 H 1.08997 * 110.92249 * 156.29846 * 17 16 9 29 29 H 1.09000 * 110.49049 * 203.40574 * 18 17 16 30 30 H 1.09000 * 110.59637 * 80.81646 * 18 17 16 31 31 H 1.09000 * 110.03323 * 359.95315 * 19 9 7 32 32 H 1.08997 * 110.03328 * 121.33586 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0817 -1.1958 0.0758 9 6 1.2547 -2.4969 -0.1077 10 6 0.2838 -2.6291 1.0373 11 6 -1.0830 -2.6136 0.8043 12 6 -1.9386 -2.7377 1.8881 13 6 -1.4044 -2.8724 3.1558 14 7 -0.0988 -2.8830 3.3400 15 6 0.7446 -2.7673 2.3328 16 6 0.4993 -2.5630 -1.4512 17 6 1.4540 -3.3496 -2.3846 18 6 2.0541 -4.4189 -1.4383 19 6 2.2431 -3.6762 -0.0995 20 1 -0.4850 0.8401 -0.0004 21 1 -1.4719 -2.5065 -0.1976 22 1 -3.0088 -2.7301 1.7436 23 1 -2.0641 -2.9700 4.0053 24 1 1.8077 -2.7759 2.5232 25 1 -0.4437 -3.0967 -1.3329 26 1 0.3248 -1.5599 -1.8404 27 1 2.2352 -2.6975 -2.7754 28 1 0.9024 -3.8199 -3.1986 29 1 3.0135 -4.7698 -1.8187 30 1 1.3643 -5.2542 -1.3171 31 1 3.2652 -3.3062 -0.0189 32 1 2.0212 -4.3437 0.7331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = 20.958739 kcal Electronic energy + Delta-G solvation = -14920.545221 eV Core-core repulsion = 12652.275340 eV Total energy + Delta-G solvation = -2268.269880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36849 -37.04696 -32.68331 -31.30663 -30.55633 -27.73294 -27.28882 -24.21606 -22.42308 -21.96672 -19.56734 -18.63327 -16.44903 -16.15472 -14.95169 -14.78043 -14.44732 -14.01738 -13.35589 -12.80552 -12.61017 -12.41878 -11.85674 -11.66988 -11.05275 -10.97718 -10.64745 -10.44655 -10.28683 -10.09438 -9.90229 -9.67083 -9.39082 -8.97691 -8.66802 -8.53775 -8.25973 -7.64857 -6.05286 -4.15146 2.27847 2.53284 3.25398 3.34814 3.37364 4.37125 4.96214 5.20131 5.44048 5.63257 5.72279 5.74327 5.82072 6.13163 6.18241 6.28670 6.41361 6.45406 6.56250 6.67355 6.70113 6.75435 6.86684 6.92964 7.13487 7.14318 7.26970 7.45113 7.55720 7.72632 7.90501 7.92472 8.33773 8.84861 9.03325 9.49668 10.95830 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.015878 C = 0.011112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.988924 B = 1763.039226 C = 2519.305938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.103 3.897 10 C -0.036 4.036 11 C -0.052 4.052 12 C -0.185 4.185 13 C 0.052 3.948 14 N -0.500 5.500 15 C 0.084 3.916 16 C -0.104 4.104 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.111 4.111 20 H 0.260 0.740 21 H 0.127 0.873 22 H 0.112 0.888 23 H 0.133 0.867 24 H 0.140 0.860 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -5.409 -1.367 5.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.038 4.038 11 C -0.078 4.078 12 C -0.205 4.205 13 C -0.105 4.105 14 N -0.209 5.209 15 C -0.072 4.072 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.149 4.149 20 H 0.069 0.931 21 H 0.145 0.855 22 H 0.130 0.870 23 H 0.150 0.850 24 H 0.158 0.842 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.744 -5.365 -0.505 5.439 hybrid contribution -0.065 1.345 -0.788 1.560 sum -0.808 -4.020 -1.292 4.299 Atomic orbital electron populations 1.69981 1.05685 1.26393 1.48988 1.24966 0.94870 0.99028 0.94686 0.86596 0.80319 0.84000 0.77525 1.19704 1.21033 1.21188 1.21113 0.92777 0.89078 1.51210 0.92043 1.17774 0.90059 0.93209 0.88781 1.21206 0.94779 0.91110 0.96687 1.21406 0.93333 0.94423 0.98631 1.21909 0.99817 1.04220 0.94547 1.22220 0.91750 1.00883 0.95687 1.67480 1.03984 1.13512 1.35938 1.22346 0.98666 0.97715 0.88494 1.22515 0.95605 0.99793 0.96226 1.22458 0.99261 0.97169 0.96978 1.22308 0.99116 0.97578 0.96872 1.22347 1.00274 0.96782 0.95469 0.93051 0.85520 0.86955 0.84959 0.84237 0.94213 0.90492 0.92018 0.93765 0.93282 0.93091 0.92205 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.14 10.28 55.43 0.57 -22.57 16 2 C 0.07 1.76 4.87 -17.82 -0.09 1.67 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.50 -12.73 7.79 -34.44 -0.27 -13.00 16 8 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 9 C 0.10 2.32 0.45 -155.69 -0.07 2.25 16 10 C -0.04 -0.81 3.64 -104.48 -0.38 -1.19 16 11 C -0.05 -1.14 7.96 -39.28 -0.31 -1.45 16 12 C -0.18 -3.65 10.11 -39.44 -0.40 -4.05 16 13 C 0.05 1.03 11.18 -17.54 -0.20 0.83 16 14 N -0.50 -11.10 10.36 -13.25 -0.14 -11.24 16 15 C 0.08 1.92 9.78 -17.55 -0.17 1.75 16 16 C -0.10 -2.22 4.82 -25.03 -0.12 -2.34 16 17 C -0.12 -2.23 6.91 -24.70 -0.17 -2.40 16 18 C -0.12 -2.11 6.83 -25.07 -0.17 -2.28 16 19 C -0.11 -2.20 5.79 -25.61 -0.15 -2.35 16 20 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 21 H 0.13 2.73 5.83 -52.49 -0.31 2.43 16 22 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 23 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 24 H 0.14 3.06 7.95 -52.49 -0.42 2.64 16 25 H 0.04 0.82 5.67 -51.93 -0.29 0.52 16 26 H 0.08 1.86 6.65 -51.92 -0.35 1.51 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.18 7.37 -51.93 -0.38 0.80 16 32 H 0.04 0.85 7.14 -51.93 -0.37 0.48 16 LS Contribution 256.55 15.07 3.87 3.87 Total: -1.00 -26.98 256.55 -7.39 -34.37 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.17 Total: 2.49 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.50 Total: -22.56 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.43 Total: -33.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.98 -7.39 -34.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.327 kcal (2) G-P(sol) polarization free energy of solvation -26.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds