Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48497 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47310 * 300.00190 * 3 2 1 6 6 H 1.48506 * 109.46901 * 60.00243 * 3 2 1 7 7 C 1.37879 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99868 * 184.68033 * 7 2 1 9 9 C 1.50697 * 120.00064 * 4.68321 * 7 2 1 10 10 C 1.50701 * 110.02040 * 300.87583 * 9 7 2 11 11 C 1.38662 * 120.41944 * 113.21420 * 10 9 7 12 12 C 1.38639 * 118.42015 * 180.02562 * 11 10 9 13 13 C 1.38227 * 119.15627 * 359.97438 * 12 11 10 14 14 N 1.31857 * 120.76875 * 0.02562 * 13 12 11 15 15 C 1.31882 * 121.72457 * 359.97438 * 14 13 12 16 16 C 1.54272 * 110.03408 * 62.26802 * 9 7 2 17 17 C 1.54960 * 104.16368 * 95.75192 * 16 9 7 18 18 C 1.54887 * 102.77718 * 37.88713 * 17 16 9 19 19 C 1.53878 * 110.03263 * 179.48064 * 9 7 2 20 20 H 0.97001 * 119.99725 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.79346 * 359.97438 * 11 10 9 22 22 H 1.07994 * 120.42000 * 180.02562 * 12 11 10 23 23 H 1.08000 * 119.61348 * 180.02562 * 13 12 11 24 24 H 1.08001 * 119.61840 * 179.72429 * 15 14 13 25 25 H 1.09001 * 110.48889 * 214.40530 * 16 9 7 26 26 H 1.09008 * 110.48114 * 337.04351 * 16 9 7 27 27 H 1.09007 * 110.71849 * 279.57773 * 17 16 9 28 28 H 1.08997 * 110.92249 * 156.29846 * 17 16 9 29 29 H 1.09000 * 110.49049 * 203.40574 * 18 17 16 30 30 H 1.09000 * 110.59637 * 80.81646 * 18 17 16 31 31 H 1.09000 * 110.03323 * 359.95315 * 19 9 7 32 32 H 1.08997 * 110.03328 * 121.33586 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0817 -1.1958 0.0758 9 6 1.2547 -2.4969 -0.1077 10 6 0.2838 -2.6291 1.0373 11 6 -1.0830 -2.6136 0.8043 12 6 -1.9386 -2.7377 1.8881 13 6 -1.4044 -2.8724 3.1558 14 7 -0.0988 -2.8830 3.3400 15 6 0.7446 -2.7673 2.3328 16 6 0.4993 -2.5630 -1.4512 17 6 1.4540 -3.3496 -2.3846 18 6 2.0541 -4.4189 -1.4383 19 6 2.2431 -3.6762 -0.0995 20 1 -0.4850 0.8401 -0.0004 21 1 -1.4719 -2.5065 -0.1976 22 1 -3.0088 -2.7301 1.7436 23 1 -2.0641 -2.9700 4.0053 24 1 1.8077 -2.7759 2.5232 25 1 -0.4437 -3.0967 -1.3329 26 1 0.3248 -1.5599 -1.8404 27 1 2.2352 -2.6975 -2.7754 28 1 0.9024 -3.8199 -3.1986 29 1 3.0135 -4.7698 -1.8187 30 1 1.3643 -5.2542 -1.3171 31 1 3.2652 -3.3062 -0.0189 32 1 2.0212 -4.3437 0.7331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = 7.301646 kcal Electronic energy + Delta-G solvation = -14921.137437 eV Core-core repulsion = 12652.275340 eV Total energy + Delta-G solvation = -2268.862096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02156 -38.66486 -34.51139 -32.99268 -32.21111 -29.33056 -29.00228 -26.04576 -24.07732 -23.58261 -21.10642 -20.35057 -18.24188 -17.83464 -16.67340 -16.56683 -16.04866 -15.64616 -14.96066 -14.45144 -14.22383 -14.14078 -13.54738 -13.39405 -12.91716 -12.65938 -12.46347 -12.17433 -11.85519 -11.67853 -11.50481 -11.24255 -11.07428 -10.75705 -10.52058 -10.22526 -9.97421 -9.34886 -8.00807 -6.14189 0.63400 0.86308 1.37455 1.42998 1.50109 2.44425 3.21085 3.32621 3.87413 4.11042 4.19895 4.22751 4.33519 4.51543 4.60547 4.68270 4.87930 4.94807 5.04435 5.12536 5.13657 5.21574 5.31152 5.37867 5.50876 5.53234 5.70952 5.74476 5.78154 5.85716 6.15156 6.26568 6.46868 6.90496 7.37498 7.51193 8.97140 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.015878 C = 0.011112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.988924 B = 1763.039226 C = 2519.305938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.029 3.971 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.293 1.293 7 C -0.511 4.511 8 H 0.051 0.949 9 C 0.093 3.907 10 C -0.051 4.051 11 C -0.066 4.066 12 C -0.180 4.180 13 C 0.049 3.951 14 N -0.515 5.515 15 C 0.065 3.935 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.110 4.110 20 H 0.255 0.745 21 H 0.124 0.876 22 H 0.148 0.852 23 H 0.170 0.830 24 H 0.136 0.864 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -6.324 -1.471 6.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.220 1.220 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.092 3.908 10 C -0.053 4.053 11 C -0.092 4.092 12 C -0.200 4.200 13 C -0.109 4.109 14 N -0.225 5.225 15 C -0.091 4.091 16 C -0.138 4.138 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.148 4.148 20 H 0.064 0.936 21 H 0.142 0.858 22 H 0.166 0.834 23 H 0.187 0.813 24 H 0.153 0.847 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.253 -6.285 -0.617 6.438 hybrid contribution 0.053 1.620 -0.711 1.770 sum -1.200 -4.665 -1.328 4.997 Atomic orbital electron populations 1.70077 1.06294 1.26267 1.50037 1.25472 0.95522 1.01131 0.95061 0.85880 0.79569 0.81459 0.76967 1.19406 1.20843 1.22027 1.21363 0.92537 0.90625 1.50373 0.93056 1.17858 0.90633 0.92979 0.89329 1.21260 0.95443 0.91926 0.96676 1.21534 0.93379 0.94910 0.99332 1.22281 1.01461 1.02454 0.93774 1.22868 0.91397 0.99424 0.97164 1.67496 1.05105 1.13998 1.35878 1.22364 0.98853 0.98970 0.88867 1.22383 0.96580 0.98533 0.96330 1.22427 0.98594 0.97102 0.97318 1.22276 1.00624 0.97247 0.94886 1.22297 0.99073 0.96187 0.97234 0.93616 0.85804 0.83445 0.81260 0.84659 0.93667 0.93746 0.92838 0.91281 0.91034 0.91644 0.92906 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.50 10.28 21.45 0.22 -47.28 16 2 C 0.03 1.52 4.87 84.65 0.41 1.94 16 3 Si 0.93 42.82 29.54 68.60 2.03 44.84 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 7 C -0.51 -26.07 7.79 25.60 0.20 -25.87 16 8 H 0.05 2.65 7.33 -2.91 -0.02 2.63 16 9 C 0.09 4.18 0.45 -52.95 -0.02 4.16 16 10 C -0.05 -2.31 3.64 -19.77 -0.07 -2.38 16 11 C -0.07 -2.80 7.96 22.47 0.18 -2.62 16 12 C -0.18 -6.69 10.11 22.36 0.23 -6.46 16 13 C 0.05 1.82 11.18 84.69 0.95 2.77 16 14 N -0.52 -22.32 10.36 -195.83 -2.03 -24.35 16 15 C 0.07 2.97 9.78 84.67 0.83 3.79 16 16 C -0.10 -4.27 4.82 31.70 0.15 -4.12 16 17 C -0.12 -4.11 6.91 31.91 0.22 -3.89 16 18 C -0.11 -3.66 6.83 31.67 0.22 -3.44 16 19 C -0.11 -4.27 5.79 31.32 0.18 -4.09 16 20 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 21 H 0.12 5.28 5.83 -2.91 -0.02 5.26 16 22 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 23 H 0.17 4.98 8.06 -2.91 -0.02 4.95 16 24 H 0.14 6.05 7.95 -2.91 -0.02 6.03 16 25 H 0.04 1.84 5.67 -2.39 -0.01 1.82 16 26 H 0.04 2.16 6.65 -2.38 -0.02 2.14 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 2.07 7.37 -2.39 -0.02 2.05 16 32 H 0.05 1.78 7.14 -2.39 -0.02 1.76 16 Total: -1.00 -56.79 256.55 4.78 -52.00 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.10 Total: 15.00 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.47 Total: -40.21 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.81 Total: -71.63 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -56.79 4.78 -52.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.304 kcal (2) G-P(sol) polarization free energy of solvation -56.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds