Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47164 * 90.00116 * 3 2 1 5 5 H 1.48501 * 109.47195 * 210.00312 * 3 2 1 6 6 H 1.48502 * 109.47182 * 329.99841 * 3 2 1 7 7 C 1.37875 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00325 * 175.09359 * 7 2 1 9 9 C 1.50702 * 119.99828 * 355.09002 * 7 2 1 10 10 N 1.46899 * 115.55053 * 279.53209 * 9 7 2 11 11 C 1.46894 * 111.00159 * 294.69824 * 10 9 7 12 12 C 1.50707 * 109.47087 * 175.69569 * 11 10 9 13 13 C 1.38237 * 119.99942 * 269.72635 * 12 11 10 14 14 C 1.38234 * 119.99957 * 179.76585 * 13 12 11 15 15 C 1.38238 * 119.99753 * 0.50680 * 14 13 12 16 16 C 1.38232 * 120.00054 * 359.74707 * 15 14 13 17 17 C 1.38229 * 119.99812 * 90.00098 * 12 11 10 18 18 C 1.52996 * 117.49725 * 133.82474 * 9 7 2 19 19 C 1.52997 * 60.00170 * 252.51062 * 18 9 7 20 20 H 0.97007 * 120.00460 * 359.97438 * 1 2 3 21 21 H 1.00897 * 111.00048 * 170.73854 * 10 9 7 22 22 H 1.09000 * 109.47265 * 295.69472 * 11 10 9 23 23 H 1.08999 * 109.47102 * 55.70097 * 11 10 9 24 24 H 1.08007 * 119.99792 * 0.02562 * 13 12 11 25 25 H 1.08000 * 119.99760 * 180.23149 * 14 13 12 26 26 H 1.07999 * 119.99359 * 179.72526 * 15 14 13 27 27 H 1.07995 * 120.00282 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.00460 * 359.97438 * 17 12 11 29 29 H 1.08998 * 117.49905 * 0.02562 * 18 9 7 30 30 H 1.09006 * 117.49572 * 145.02337 * 18 9 7 31 31 H 1.08996 * 117.49841 * 252.51144 * 19 18 9 32 32 H 1.08997 * 117.49681 * 107.48954 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0805 9 6 1.2552 -2.4968 0.1106 10 7 0.8473 -2.8792 1.4690 11 6 2.0183 -3.1452 2.3150 12 6 1.5657 -3.4303 3.7240 13 6 1.4403 -2.3959 4.6323 14 6 1.0205 -2.6567 5.9233 15 6 0.7363 -3.9535 6.3089 16 6 0.8668 -4.9886 5.4021 17 6 1.2816 -4.7270 4.1096 18 6 1.6437 -3.6196 -0.8533 19 6 0.3206 -2.8746 -1.0404 20 1 -0.4851 0.8401 0.0004 21 1 0.2268 -3.6746 1.4498 22 1 2.5595 -4.0076 1.9257 23 1 2.6733 -2.2740 2.3132 24 1 1.6662 -1.3833 4.3321 25 1 0.9189 -1.8480 6.6319 26 1 0.4126 -4.1578 7.3188 27 1 0.6452 -6.0017 5.7034 28 1 1.3835 -5.5357 3.4011 29 1 2.4416 -3.4162 -1.5675 30 1 1.5968 -4.6425 -0.4795 31 1 -0.5967 -3.4072 -0.7897 32 1 0.2477 -2.1809 -1.8779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261121230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = 48.640323 kcal Electronic energy + Delta-G solvation = -14044.313753 eV Core-core repulsion = 11777.244236 eV Total energy + Delta-G solvation = -2267.069517 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88886 -36.90379 -33.08998 -31.89813 -30.53548 -29.50727 -25.50868 -24.37930 -22.18978 -21.19937 -20.47875 -19.45353 -16.43172 -16.12814 -15.03393 -14.80460 -14.56397 -14.13381 -13.91359 -13.07175 -12.92252 -12.64407 -12.24107 -11.85856 -11.54625 -11.04665 -10.92527 -10.77756 -10.62348 -10.40651 -10.20733 -9.75036 -9.16112 -8.69063 -8.57527 -8.44480 -8.16842 -6.91314 -5.97217 -4.07891 1.71415 1.75965 3.31396 3.38460 3.40411 4.13645 4.42193 5.13854 5.20225 5.24819 5.32920 5.37860 5.49140 5.71094 5.87025 5.89525 6.14404 6.27318 6.32140 6.40767 6.47272 6.60121 6.71652 6.77868 6.82817 6.88127 7.14427 7.16691 7.37431 7.47507 7.80617 8.03855 8.60304 8.72165 8.99236 9.60146 11.10744 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028972 B = 0.008735 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.211067 B = 3204.548532 C = 3851.371582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.085 3.915 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.497 4.497 8 H 0.058 0.942 9 C 0.223 3.777 10 N -0.635 5.635 11 C 0.107 3.893 12 C -0.063 4.063 13 C -0.096 4.096 14 C -0.125 4.125 15 C -0.134 4.134 16 C -0.126 4.126 17 C -0.121 4.121 18 C -0.256 4.256 19 C -0.153 4.153 20 H 0.258 0.742 21 H 0.309 0.691 22 H 0.020 0.980 23 H 0.087 0.913 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -6.631 8.191 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.121 4.121 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.133 3.867 10 N -0.262 5.262 11 C -0.022 4.022 12 C -0.064 4.064 13 C -0.114 4.114 14 C -0.143 4.143 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.140 4.140 18 C -0.297 4.297 19 C -0.191 4.191 20 H 0.068 0.932 21 H 0.126 0.874 22 H 0.038 0.962 23 H 0.105 0.895 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.509 -5.848 8.407 10.352 hybrid contribution 0.532 -0.041 -0.359 0.643 sum 2.040 -5.890 8.048 10.180 Atomic orbital electron populations 1.70050 1.05860 1.26177 1.46998 1.24941 0.94680 0.98642 0.93854 0.86706 0.79967 0.83731 0.78196 1.20526 1.19929 1.21251 1.20152 0.92240 0.88365 1.52786 0.92372 1.19079 0.95854 0.91019 0.80713 1.60625 1.14443 1.39059 1.12116 1.20690 0.93830 0.99922 0.87764 1.20161 0.97166 0.92725 0.96309 1.21152 0.98154 0.99419 0.92695 1.21128 1.00154 0.96526 0.96459 1.21014 1.01786 0.93198 0.99196 1.21013 1.00880 0.98657 0.93902 1.21053 1.00370 0.96465 0.96076 1.23603 1.00193 0.96681 1.09196 1.22613 0.91080 1.01840 1.03564 0.93174 0.87432 0.96153 0.89480 0.85723 0.86571 0.86836 0.86775 0.86744 0.90430 0.92237 0.91918 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.46 12.87 55.43 0.71 -23.75 16 2 C 0.09 2.34 5.44 -17.82 -0.10 2.24 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.50 -13.50 8.16 -34.44 -0.28 -13.78 16 8 H 0.06 1.58 7.82 -52.48 -0.41 1.16 16 9 C 0.22 5.52 1.62 -132.75 -0.21 5.31 16 10 N -0.64 -14.52 6.62 -102.40 -0.68 -15.19 16 11 C 0.11 2.14 5.70 -4.98 -0.03 2.11 16 12 C -0.06 -1.12 5.43 -104.62 -0.57 -1.69 16 13 C -0.10 -1.65 9.70 -39.58 -0.38 -2.04 16 14 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 15 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 16 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 17 C -0.12 -1.88 9.70 -39.58 -0.38 -2.27 16 18 C -0.26 -5.68 10.12 -26.73 -0.27 -5.95 16 19 C -0.15 -3.65 9.47 -26.73 -0.25 -3.90 16 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.31 6.64 8.65 -39.29 -0.34 6.30 16 22 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 23 H 0.09 1.90 7.40 -51.93 -0.38 1.51 16 24 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 26 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 278.96 15.07 4.20 4.20 Total: -1.00 -28.76 278.96 -8.95 -37.71 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.49 Total: 7.62 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.67 Total: -26.55 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.03 Total: -38.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.76 -8.95 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.350 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds