Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47164 * 90.00116 * 3 2 1 5 5 H 1.48501 * 109.47195 * 210.00312 * 3 2 1 6 6 H 1.48502 * 109.47182 * 329.99841 * 3 2 1 7 7 C 1.37875 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00325 * 175.09359 * 7 2 1 9 9 C 1.50702 * 119.99828 * 355.09002 * 7 2 1 10 10 N 1.46899 * 115.55053 * 279.53209 * 9 7 2 11 11 C 1.46894 * 111.00159 * 294.69824 * 10 9 7 12 12 C 1.50707 * 109.47087 * 175.69569 * 11 10 9 13 13 C 1.38237 * 119.99942 * 269.72635 * 12 11 10 14 14 C 1.38234 * 119.99957 * 179.76585 * 13 12 11 15 15 C 1.38238 * 119.99753 * 0.50680 * 14 13 12 16 16 C 1.38232 * 120.00054 * 359.74707 * 15 14 13 17 17 C 1.38229 * 119.99812 * 90.00098 * 12 11 10 18 18 C 1.52996 * 117.49725 * 133.82474 * 9 7 2 19 19 C 1.52997 * 60.00170 * 252.51062 * 18 9 7 20 20 H 0.97007 * 120.00460 * 359.97438 * 1 2 3 21 21 H 1.00897 * 111.00048 * 170.73854 * 10 9 7 22 22 H 1.09000 * 109.47265 * 295.69472 * 11 10 9 23 23 H 1.08999 * 109.47102 * 55.70097 * 11 10 9 24 24 H 1.08007 * 119.99792 * 0.02562 * 13 12 11 25 25 H 1.08000 * 119.99760 * 180.23149 * 14 13 12 26 26 H 1.07999 * 119.99359 * 179.72526 * 15 14 13 27 27 H 1.07995 * 120.00282 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.00460 * 359.97438 * 17 12 11 29 29 H 1.08998 * 117.49905 * 0.02562 * 18 9 7 30 30 H 1.09006 * 117.49572 * 145.02337 * 18 9 7 31 31 H 1.08996 * 117.49841 * 252.51144 * 19 18 9 32 32 H 1.08997 * 117.49681 * 107.48954 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0805 9 6 1.2552 -2.4968 0.1106 10 7 0.8473 -2.8792 1.4690 11 6 2.0183 -3.1452 2.3150 12 6 1.5657 -3.4303 3.7240 13 6 1.4403 -2.3959 4.6323 14 6 1.0205 -2.6567 5.9233 15 6 0.7363 -3.9535 6.3089 16 6 0.8668 -4.9886 5.4021 17 6 1.2816 -4.7270 4.1096 18 6 1.6437 -3.6196 -0.8533 19 6 0.3206 -2.8746 -1.0404 20 1 -0.4851 0.8401 0.0004 21 1 0.2268 -3.6746 1.4498 22 1 2.5595 -4.0076 1.9257 23 1 2.6733 -2.2740 2.3132 24 1 1.6662 -1.3833 4.3321 25 1 0.9189 -1.8480 6.6319 26 1 0.4126 -4.1578 7.3188 27 1 0.6452 -6.0017 5.7034 28 1 1.3835 -5.5357 3.4011 29 1 2.4416 -3.4162 -1.5675 30 1 1.5968 -4.6425 -0.4795 31 1 -0.5967 -3.4072 -0.7897 32 1 0.2477 -2.1809 -1.8779 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261121230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = 31.998614 kcal Electronic energy + Delta-G solvation = -14045.035392 eV Core-core repulsion = 11777.244236 eV Total energy + Delta-G solvation = -2267.791156 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13971 -38.68689 -34.67932 -33.91987 -31.69555 -30.95607 -27.59818 -25.87211 -23.36088 -22.99218 -21.83449 -21.39635 -18.14024 -17.61305 -16.63492 -16.46415 -16.07108 -15.86637 -15.37781 -14.65041 -14.22279 -14.11840 -13.84976 -13.31642 -13.14695 -12.98654 -12.83610 -12.47084 -12.12653 -11.96176 -11.83893 -11.49891 -11.08066 -10.69454 -10.21901 -9.74313 -9.59415 -8.67947 -8.05846 -6.22094 0.52533 0.58288 1.41589 1.43178 1.51753 2.43240 2.91228 3.20935 3.49549 3.77807 4.02641 4.13237 4.24776 4.35687 4.47333 4.49441 4.58500 4.71805 4.77623 4.89494 4.91612 5.06736 5.21331 5.25550 5.28022 5.57171 5.63926 5.67628 5.69555 5.87554 6.12870 6.21413 6.74104 6.76303 7.07133 7.48818 9.01421 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.028972 B = 0.008735 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.211067 B = 3204.548532 C = 3851.371582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.040 3.960 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.199 3.801 10 N -0.647 5.647 11 C 0.117 3.883 12 C -0.086 4.086 13 C -0.122 4.122 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.231 4.231 19 C -0.159 4.159 20 H 0.258 0.742 21 H 0.317 0.683 22 H 0.029 0.971 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.137 0.863 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -7.964 9.802 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.164 4.164 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.109 3.891 10 N -0.275 5.275 11 C -0.012 4.012 12 C -0.087 4.087 13 C -0.141 4.141 14 C -0.146 4.146 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.145 4.145 18 C -0.271 4.271 19 C -0.197 4.197 20 H 0.067 0.933 21 H 0.134 0.866 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.155 0.845 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.536 -7.189 10.019 12.426 hybrid contribution 0.535 0.305 -0.799 1.008 sum 2.071 -6.883 9.220 11.691 Atomic orbital electron populations 1.70157 1.07088 1.26756 1.48327 1.25617 0.95435 1.01663 0.93639 0.85756 0.78917 0.79956 0.78133 1.20343 1.19330 1.20847 1.20427 0.92102 0.90024 1.52516 0.93250 1.19086 0.96684 0.91413 0.81918 1.60425 1.15794 1.39840 1.11418 1.20536 0.92634 0.98846 0.89164 1.20013 0.99479 0.94190 0.95002 1.21151 1.00070 0.98508 0.94323 1.21392 0.99378 0.98213 0.95568 1.21463 0.99964 0.92281 1.00782 1.21430 0.99180 1.00484 0.92881 1.21229 1.00183 0.95576 0.97467 1.23560 0.98765 0.97247 1.07565 1.22519 0.92344 1.02151 1.02682 0.93333 0.86551 0.95313 0.92377 0.87876 0.84494 0.83283 0.83373 0.85472 0.90552 0.89626 0.90843 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.73 12.87 21.45 0.28 -51.46 16 2 C 0.04 2.21 5.44 84.65 0.46 2.67 16 3 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.51 -28.41 8.16 25.60 0.21 -28.20 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.20 9.95 1.62 2.78 0.00 9.96 16 10 N -0.65 -29.81 6.62 -477.88 -3.17 -32.97 16 11 C 0.12 4.75 5.70 85.56 0.49 5.24 16 12 C -0.09 -3.05 5.43 -19.86 -0.11 -3.16 16 13 C -0.12 -4.24 9.70 22.27 0.22 -4.02 16 14 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 15 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 16 C -0.12 -2.90 10.05 22.27 0.22 -2.68 16 17 C -0.13 -3.65 9.70 22.27 0.22 -3.44 16 18 C -0.23 -10.05 10.12 30.59 0.31 -9.74 16 19 C -0.16 -7.62 9.47 30.59 0.29 -7.33 16 20 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 21 H 0.32 13.50 8.65 -89.70 -0.78 12.73 16 22 H 0.03 1.10 8.09 -2.39 -0.02 1.08 16 23 H 0.06 2.65 7.40 -2.39 -0.02 2.63 16 24 H 0.10 3.90 8.06 -2.91 -0.02 3.87 16 25 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 26 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 27 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 28 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 31 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.06 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -61.99 278.96 2.21 -59.78 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.32 Total: 25.46 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 2.76 Total: -46.73 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.89 Total: -84.43 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.99 2.21 -59.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.778 kcal (2) G-P(sol) polarization free energy of solvation -61.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds