Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99528 * 2 1 4 4 H 1.48498 * 109.47211 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47115 * 30.00380 * 3 2 1 6 6 H 1.48506 * 109.46697 * 149.99941 * 3 2 1 7 7 C 1.37866 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00120 * 173.25371 * 7 2 1 9 9 C 1.50705 * 120.00172 * 353.52765 * 7 2 1 10 10 H 1.09003 * 109.46589 * 354.84255 * 9 7 2 11 11 N 1.46497 * 109.47465 * 234.84128 * 9 7 2 12 12 C 1.39673 * 120.00342 * 154.99507 * 11 9 7 13 13 C 1.38910 * 120.07082 * 359.73154 * 12 11 9 14 14 C 1.38108 * 119.92130 * 179.76869 * 13 12 11 15 15 C 1.38283 * 120.07528 * 0.50199 * 14 13 12 16 16 C 1.38278 * 120.15041 * 359.74497 * 15 14 13 17 17 C 1.38106 * 120.07551 * 0.02562 * 16 15 14 18 18 C 1.52998 * 109.47109 * 114.83956 * 9 7 2 19 19 C 1.53001 * 117.50079 * 3.88186 * 18 9 7 20 20 C 1.52998 * 117.50226 * 295.21841 * 18 9 7 21 21 H 0.96995 * 120.00225 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99872 * 335.00410 * 11 9 7 23 23 H 1.08000 * 120.04066 * 359.97438 * 13 12 11 24 24 H 1.08006 * 119.95981 * 180.25336 * 14 13 12 25 25 H 1.08004 * 119.92529 * 179.73017 * 15 14 13 26 26 H 1.08004 * 119.96513 * 179.97438 * 16 15 14 27 27 H 1.07996 * 120.04099 * 179.97438 * 17 16 15 28 28 H 1.09007 * 115.55275 * 149.54890 * 18 9 7 29 29 H 1.08997 * 117.49559 * 359.97438 * 19 18 9 30 30 H 1.08997 * 117.50000 * 145.01836 * 19 18 9 31 31 H 1.08995 * 117.50359 * 214.97932 * 20 18 9 32 32 H 1.09001 * 117.49868 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0790 -1.1971 -0.1104 9 6 1.2584 -2.4950 0.1460 10 1 0.2039 -2.2902 0.3310 11 7 1.8134 -3.2524 1.2705 12 6 1.0233 -4.1908 1.9383 13 6 -0.2907 -4.4032 1.5410 14 6 -1.0677 -5.3353 2.2005 15 6 -0.5422 -6.0493 3.2618 16 6 0.7639 -5.8367 3.6631 17 6 1.5479 -4.9095 3.0050 18 6 1.4012 -3.3124 -1.1394 19 6 2.2987 -2.7454 -2.2412 20 6 0.7777 -2.7397 -2.4138 21 1 -0.4850 0.8400 0.0004 22 1 2.7296 -3.1021 1.5514 23 1 -0.7032 -3.8425 0.7153 24 1 -2.0882 -5.5038 1.8895 25 1 -1.1534 -6.7745 3.7785 26 1 1.1711 -6.3957 4.4926 27 1 2.5677 -4.7436 3.3192 28 1 1.3828 -4.3949 -1.0127 29 1 2.7870 -1.7898 -2.0504 30 1 2.8704 -3.4548 -2.8395 31 1 0.3494 -3.4453 -3.1257 32 1 0.2653 -1.7807 -2.3364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = 45.660369 kcal Electronic energy + Delta-G solvation = -14231.448541 eV Core-core repulsion = 11964.249804 eV Total energy + Delta-G solvation = -2267.198737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.68027 -36.81400 -33.84942 -32.50023 -30.20939 -28.78152 -26.13104 -23.79885 -21.77170 -21.32871 -20.86591 -19.05479 -17.06411 -16.18988 -15.17617 -15.06572 -14.72273 -13.85187 -13.48227 -13.40903 -12.71129 -12.66276 -12.31181 -11.90807 -11.29550 -11.05832 -10.81266 -10.66958 -10.50161 -10.25790 -10.14892 -9.74714 -9.31263 -9.01979 -8.67635 -8.57140 -8.26361 -6.40226 -6.24605 -4.31999 2.11019 2.37637 3.18089 3.26738 3.29336 4.22477 4.52531 4.62021 4.98998 5.21896 5.54232 5.58171 5.83458 5.91437 6.09895 6.14492 6.18937 6.31527 6.52590 6.57387 6.62181 6.69065 7.05215 7.12797 7.13934 7.25519 7.30068 7.34080 7.40658 7.62965 7.68973 8.01798 8.53314 8.82575 8.95177 9.35272 10.81657 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030785 B = 0.008887 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.322261 B = 3150.017127 C = 3501.367064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.075 3.925 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.274 3.726 10 H 0.084 0.916 11 N -0.721 5.721 12 C 0.236 3.764 13 C -0.202 4.202 14 C -0.073 4.073 15 C -0.212 4.212 16 C -0.075 4.075 17 C -0.223 4.223 18 C -0.151 4.151 19 C -0.176 4.176 20 C -0.175 4.175 21 H 0.266 0.734 22 H 0.385 0.615 23 H 0.124 0.876 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -6.592 1.684 6.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.173 3.827 10 H 0.102 0.898 11 N -0.343 5.343 12 C 0.126 3.874 13 C -0.225 4.225 14 C -0.092 4.092 15 C -0.232 4.232 16 C -0.094 4.094 17 C -0.246 4.246 18 C -0.170 4.170 19 C -0.213 4.213 20 C -0.212 4.212 21 H 0.076 0.924 22 H 0.219 0.781 23 H 0.142 0.858 24 H 0.128 0.872 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.597 -6.309 1.484 6.508 hybrid contribution 0.787 0.920 0.071 1.213 sum 1.384 -5.389 1.556 5.777 Atomic orbital electron populations 1.69892 1.06034 1.27361 1.48154 1.24997 0.94876 0.99447 0.93674 0.86565 0.79988 0.83008 0.78320 1.20400 1.20993 1.19706 1.21012 0.93870 0.90025 1.51058 0.92191 1.18554 0.97837 0.86948 0.79401 0.89813 1.46140 1.13898 1.39664 1.34557 1.18152 0.91072 0.87976 0.90171 1.20790 0.93656 1.03249 1.04774 1.20804 0.98488 0.94995 0.94946 1.20617 0.96350 1.04864 1.01415 1.20677 0.93988 0.96661 0.98062 1.20520 1.00424 1.03073 1.00630 1.22987 1.04083 0.97186 0.92793 1.22951 0.92766 1.03096 1.02506 1.22708 0.96058 1.02804 0.99667 0.92362 0.78133 0.85784 0.87248 0.87723 0.87475 0.87274 0.90944 0.87391 0.91909 0.91356 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.73 12.64 55.43 0.70 -23.03 16 2 C 0.08 1.94 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 20.15 29.54 -169.99 -5.02 15.12 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -13.10 6.34 -34.44 -0.22 -13.31 16 8 H 0.06 1.50 7.40 -52.49 -0.39 1.11 16 9 C 0.27 6.46 2.33 -69.08 -0.16 6.30 16 10 H 0.08 2.23 5.30 -51.93 -0.28 1.95 16 11 N -0.72 -15.44 5.24 -53.29 -0.28 -15.72 16 12 C 0.24 4.79 6.64 -83.79 -0.56 4.24 16 13 C -0.20 -4.05 9.18 -39.38 -0.36 -4.42 16 14 C -0.07 -1.28 10.04 -39.61 -0.40 -1.68 16 15 C -0.21 -3.44 10.04 -39.55 -0.40 -3.83 16 16 C -0.08 -1.22 10.04 -39.62 -0.40 -1.62 16 17 C -0.22 -4.01 9.90 -39.38 -0.39 -4.40 16 18 C -0.15 -3.25 5.91 -90.62 -0.54 -3.78 16 19 C -0.18 -3.59 9.68 -26.69 -0.26 -3.85 16 20 C -0.17 -3.62 10.11 -26.69 -0.27 -3.89 16 21 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 22 H 0.39 7.80 8.61 -40.82 -0.35 7.45 16 23 H 0.12 2.65 6.21 -52.49 -0.33 2.33 16 24 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 25 H 0.10 1.43 8.06 -52.48 -0.42 1.01 16 26 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 27 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.11 2.36 6.19 -51.93 -0.32 2.04 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 2.34 8.14 -51.93 -0.42 1.92 16 LS Contribution 271.23 15.07 4.09 4.09 Total: -1.00 -26.16 271.23 -8.73 -34.90 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.18 Total: 13.04 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -4.04 Total: -28.40 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.42 Total: -38.75 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.16 -8.73 -34.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.557 kcal (2) G-P(sol) polarization free energy of solvation -26.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds