Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38279 * 119.92423 * 2 1 4 4 C 1.38108 * 120.07537 * 179.97438 * 3 2 1 5 5 C 1.38906 * 119.92399 * 359.97438 * 4 3 2 6 6 N 1.39681 * 120.07643 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99969 * 174.24120 * 6 5 4 8 8 C 1.50699 * 115.56307 * 82.27203 * 7 6 5 9 9 H 1.07998 * 119.99678 * 219.71097 * 8 7 6 10 10 C 1.37877 * 119.99978 * 39.70631 * 8 7 6 11 11 N 1.31511 * 119.99976 * 8.65924 * 10 8 7 12 12 Si 1.86799 * 119.99948 * 188.65623 * 10 8 7 13 13 H 1.48504 * 109.47294 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47010 * 120.00179 * 12 10 8 15 15 H 1.48490 * 109.47300 * 240.00334 * 12 10 8 16 16 C 1.52998 * 117.49695 * 296.58041 * 7 6 5 17 17 C 1.52995 * 117.49580 * 227.95819 * 7 6 5 18 18 C 1.38917 * 119.85267 * 0.26034 * 5 4 3 19 19 C 1.38109 * 119.91743 * 359.49207 * 18 5 4 20 20 H 1.09006 * 109.46835 * 90.00476 * 1 2 3 21 21 H 1.09003 * 109.47198 * 210.00383 * 1 2 3 22 22 H 1.08996 * 109.47110 * 330.00862 * 1 2 3 23 23 H 1.08001 * 119.96696 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.03619 * 180.02562 * 4 3 2 25 25 H 0.96999 * 119.99415 * 354.24018 * 6 5 4 26 26 H 0.96999 * 119.99781 * 174.99140 * 11 10 8 27 27 H 1.09004 * 117.49983 * 145.02836 * 16 7 6 28 28 H 1.08997 * 117.50343 * 359.97438 * 16 7 6 29 29 H 1.09004 * 117.50137 * 359.97438 * 17 7 6 30 30 H 1.09003 * 117.50145 * 214.98087 * 17 7 6 31 31 H 1.07995 * 120.03973 * 179.72565 * 18 5 4 32 32 H 1.08007 * 119.95705 * 180.25364 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6708 0.0000 0.0016 7 6 6.4033 -1.2622 0.1300 8 6 6.5701 -2.0498 -1.1439 9 1 6.4777 -3.1257 -1.1296 10 6 6.8405 -1.3967 -2.3277 11 7 7.1212 -0.1120 -2.3207 12 14 6.8083 -2.3369 -3.9415 13 1 6.4681 -3.7585 -3.6795 14 1 5.7874 -1.7417 -4.8408 15 1 8.1431 -2.2579 -4.5872 16 6 6.2305 -2.0500 1.4302 17 6 7.5435 -1.3167 1.1487 18 6 3.5779 -1.2021 -0.0033 19 6 2.1968 -1.1985 0.0013 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6551 2.1327 -0.0004 24 1 4.1160 2.1385 0.0010 25 1 6.1557 0.8358 -0.0834 26 1 7.3824 0.3319 -3.1427 27 1 6.2376 -3.1380 1.3641 28 1 5.5723 -1.6291 2.1902 29 1 7.7490 -0.4133 1.7230 30 1 8.4144 -1.9222 0.8975 31 1 4.1161 -2.1385 -0.0070 32 1 1.6550 -2.1328 0.0016 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 30.266340 kcal Electronic energy + Delta-G solvation = -14330.524134 eV Core-core repulsion = 12062.657862 eV Total energy + Delta-G solvation = -2267.866273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25183 -38.33886 -34.57201 -34.17428 -31.51051 -31.07931 -27.69015 -26.34831 -23.75639 -22.81921 -22.09538 -21.00577 -18.77386 -17.69997 -16.64317 -16.41164 -15.93801 -15.52896 -14.86112 -14.51059 -14.40295 -14.02081 -13.90643 -13.21341 -13.01412 -12.90142 -12.78885 -12.48342 -12.18540 -12.14341 -11.85321 -11.53834 -11.41064 -10.89466 -10.28402 -10.16972 -9.59609 -8.27154 -7.69366 -6.24654 0.77641 1.00809 1.35040 1.40406 1.49006 2.36613 2.90072 3.05555 3.23429 3.58070 4.20768 4.29915 4.44573 4.46449 4.52864 4.64811 4.77698 4.82439 4.87991 5.01156 5.06818 5.13827 5.16594 5.36888 5.40625 5.47707 5.66554 5.77329 5.83847 6.02373 6.16707 6.39173 6.69703 7.06921 7.35393 7.43247 8.88738 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.010293 C = 0.008861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.353388 B = 2719.740903 C = 3159.205571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.180 4.180 3 C -0.076 4.076 4 C -0.229 4.229 5 C 0.222 3.778 6 N -0.683 5.683 7 C 0.246 3.754 8 C -0.520 4.520 9 H 0.058 0.942 10 C 0.038 3.962 11 N -0.892 5.892 12 Si 0.947 3.053 13 H -0.267 1.267 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.190 4.190 17 C -0.195 4.195 18 C -0.207 4.207 19 C -0.083 4.083 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.137 0.863 24 H 0.114 0.886 25 H 0.389 0.611 26 H 0.260 0.740 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 0.864 4.176 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.182 4.182 3 C -0.094 4.094 4 C -0.253 4.253 5 C 0.114 3.886 6 N -0.304 5.304 7 C 0.159 3.841 8 C -0.559 4.559 9 H 0.076 0.924 10 C -0.164 4.164 11 N -0.529 5.529 12 Si 0.773 3.227 13 H -0.191 1.191 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.228 4.228 17 C -0.234 4.234 18 C -0.230 4.230 19 C -0.102 4.102 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.155 0.845 24 H 0.132 0.868 25 H 0.223 0.777 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.225 0.844 4.069 9.215 hybrid contribution 0.830 -0.064 -1.039 1.331 sum -7.395 0.780 3.030 8.030 Atomic orbital electron populations 1.20582 0.89502 1.02858 1.01948 1.19867 0.97186 0.92554 1.08636 1.20892 0.92623 0.98201 0.97727 1.20685 0.95276 0.95767 1.13554 1.18175 0.84318 0.94240 0.91860 1.44113 1.01395 1.07823 1.77063 1.18052 0.93350 0.84739 0.87966 1.21044 1.49797 0.92684 0.92335 0.92417 1.25569 0.93778 0.95541 1.01557 1.69982 1.44347 1.10335 1.28189 0.85676 0.77525 0.79290 0.80181 1.19101 1.21375 1.20336 1.23148 0.99944 0.98522 1.01201 1.23211 0.92991 1.01649 1.05511 1.20798 0.94749 0.96791 1.10624 1.20975 0.92857 0.98286 0.98064 0.91800 0.91412 0.91025 0.84513 0.86796 0.77702 0.93063 0.89418 0.90108 0.90304 0.89865 0.87322 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.18 -5.80 5.88 -19.84 -0.12 -5.92 16 3 C -0.08 -2.53 9.69 22.25 0.22 -2.31 16 4 C -0.23 -8.96 9.90 22.40 0.22 -8.74 16 5 C 0.22 9.84 6.57 38.21 0.25 10.09 16 6 N -0.68 -32.20 4.46 -302.81 -1.35 -33.55 16 7 C 0.25 11.89 1.30 2.86 0.00 11.89 16 8 C -0.52 -27.83 8.61 25.60 0.22 -27.61 16 9 H 0.06 3.09 7.83 -2.91 -0.02 3.06 16 10 C 0.04 2.07 5.36 84.66 0.45 2.52 16 11 N -0.89 -49.34 12.23 21.45 0.26 -49.07 16 12 Si 0.95 43.32 29.55 68.60 2.03 45.35 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 C -0.19 -7.95 8.78 30.59 0.27 -7.69 16 17 C -0.19 -8.46 10.16 30.59 0.31 -8.15 16 18 C -0.21 -8.88 8.92 22.40 0.20 -8.68 16 19 C -0.08 -2.99 9.69 22.25 0.22 -2.78 16 20 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 21 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 22 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 23 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 24 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 25 H 0.39 18.58 8.62 -92.71 -0.80 17.78 16 26 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 27 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 28 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.11 5.01 5.97 -2.91 -0.02 5.00 16 32 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -57.46 274.22 4.20 -53.26 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.30 Total: 32.81 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 2.96 Total: -48.80 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -1.09 Total: -82.62 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -57.46 4.20 -53.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.530 kcal (2) G-P(sol) polarization free energy of solvation -57.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds