Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86796 * 120.00157 * 2 1 4 4 H 1.48501 * 109.47372 * 239.99934 * 3 2 1 5 5 H 1.48498 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47080 * 119.99658 * 3 2 1 7 7 C 1.38799 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00242 * 201.06063 * 7 2 1 9 9 N 1.36849 * 119.99951 * 21.05489 * 7 2 1 10 10 C 1.39299 * 120.00115 * 205.86942 * 9 7 2 11 11 C 1.39087 * 120.08570 * 268.18216 * 10 9 7 12 12 C 1.38044 * 119.90901 * 180.29895 * 11 10 9 13 13 C 1.38334 * 120.09056 * 359.46638 * 12 11 10 14 14 C 1.38330 * 120.17727 * 0.51729 * 13 12 11 15 15 C 1.38048 * 120.09055 * 359.75918 * 14 13 12 16 16 C 1.46505 * 119.99941 * 25.86710 * 9 7 2 17 17 C 1.53777 * 113.61579 * 223.70415 * 16 9 7 18 18 C 1.53947 * 87.01993 * 220.05065 * 17 16 9 19 19 C 1.53772 * 87.11297 * 25.36344 * 18 17 16 20 20 H 0.96999 * 120.00443 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.04502 * 0.02633 * 11 10 9 22 22 H 1.08000 * 119.95739 * 179.72805 * 12 11 10 23 23 H 1.08004 * 119.91349 * 180.23613 * 13 12 11 24 24 H 1.08003 * 119.95806 * 179.74180 * 14 13 12 25 25 H 1.08002 * 120.05002 * 179.97438 * 15 14 13 26 26 H 1.08993 * 112.84841 * 354.90198 * 16 9 7 27 27 H 1.08996 * 113.61370 * 334.57309 * 17 16 9 28 28 H 1.08998 * 113.61385 * 105.47006 * 17 16 9 29 29 H 1.09000 * 113.53445 * 270.80996 * 18 17 16 30 30 H 1.09000 * 113.66900 * 139.93937 * 18 17 16 31 31 H 1.09000 * 113.61662 * 220.09122 * 19 18 17 32 32 H 1.09002 * 113.69407 * 89.20136 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1037 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1036 1.6963 1.2126 7 6 2.0099 -1.2020 -0.0005 8 1 3.0358 -1.2334 0.3355 9 7 1.3942 -2.3474 -0.4268 10 6 1.8257 -3.5861 0.0421 11 6 2.7911 -4.2997 -0.6602 12 6 3.2116 -5.5297 -0.1955 13 6 2.6822 -6.0477 0.9729 14 6 1.7221 -5.3409 1.6745 15 6 1.2921 -4.1128 1.2135 16 6 0.2811 -2.2709 -1.3764 17 6 -0.8974 -3.1921 -1.0196 18 6 -1.0114 -3.4954 -2.5246 19 6 0.4805 -3.1383 -2.6304 20 1 -0.4851 0.8400 -0.0004 21 1 3.2080 -3.8941 -1.5702 22 1 3.9580 -6.0865 -0.7425 23 1 3.0160 -7.0086 1.3359 24 1 1.3081 -5.7506 2.5840 25 1 0.5421 -3.5618 1.7615 26 1 -0.0171 -1.2460 -1.5972 27 1 -0.6103 -4.0562 -0.4206 28 1 -1.7588 -2.6617 -0.6137 29 1 -1.6645 -2.8056 -3.0594 30 1 -1.2270 -4.5408 -2.7452 31 1 0.7300 -2.5646 -3.5230 32 1 1.1462 -3.9869 -2.4731 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143153.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = 68.848861 kcal Electronic energy + Delta-G solvation = -14708.436471 eV Core-core repulsion = 12442.243262 eV Total energy + Delta-G solvation = -2266.193209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01562 -37.17716 -33.99466 -31.48763 -30.17932 -28.21471 -24.83124 -24.62167 -23.06429 -21.64326 -20.56015 -18.41812 -17.28285 -15.98991 -15.26507 -14.68157 -14.28045 -14.11888 -13.62639 -13.18776 -12.70799 -11.99893 -11.84765 -11.61943 -11.42110 -11.14211 -10.97974 -10.73052 -10.65382 -10.45740 -10.15071 -9.70293 -9.51137 -9.27649 -8.50286 -8.19887 -7.77119 -6.88405 -5.90200 -3.35663 2.13297 2.16462 3.35080 3.40581 3.43173 4.41020 4.58255 5.24376 5.30834 5.54445 5.59286 5.65815 5.69562 5.78304 5.91499 6.20193 6.25118 6.34803 6.38078 6.59344 6.66234 6.70844 6.80202 6.89099 7.04308 7.09519 7.18213 7.21662 7.60360 7.65320 7.78061 7.80276 8.43547 9.12437 9.82640 10.25330 11.15976 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.011888 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.739763 B = 2354.799813 C = 2914.521321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.009 3.991 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.547 5.547 10 C 0.218 3.782 11 C -0.142 4.142 12 C -0.123 4.123 13 C -0.153 4.153 14 C -0.123 4.123 15 C -0.133 4.133 16 C 0.187 3.813 17 C -0.155 4.155 18 C -0.141 4.141 19 C -0.176 4.176 20 H 0.257 0.743 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -7.692 -1.649 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.190 4.190 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.087 0.913 9 N -0.262 5.262 10 C 0.124 3.876 11 C -0.162 4.162 12 C -0.141 4.141 13 C -0.171 4.171 14 C -0.142 4.142 15 C -0.153 4.153 16 C 0.081 3.919 17 C -0.195 4.195 18 C -0.179 4.179 19 C -0.216 4.216 20 H 0.067 0.933 21 H 0.133 0.867 22 H 0.127 0.873 23 H 0.125 0.875 24 H 0.126 0.874 25 H 0.135 0.865 26 H 0.147 0.853 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.075 -7.478 -1.629 7.728 hybrid contribution 0.368 0.777 0.094 0.865 sum 1.443 -6.700 -1.535 7.024 Atomic orbital electron populations 1.70007 1.05290 1.25948 1.52217 1.24972 0.95231 0.98547 1.00284 0.86330 0.79048 0.82883 0.78336 1.20813 1.21505 1.20727 1.19110 0.94408 0.84732 1.40599 0.91276 1.41541 1.37583 0.99479 1.47594 1.17778 0.91449 0.87550 0.90795 1.21775 0.98406 0.95154 1.00875 1.20904 1.00316 0.96154 0.96767 1.20875 0.99562 0.99929 0.96728 1.20979 0.98130 0.95582 0.99486 1.21984 1.00357 0.95104 0.97893 1.22046 0.85122 0.99270 0.85458 1.23454 1.01228 1.00355 0.94417 1.22644 0.97405 0.99513 0.98386 1.23782 0.95392 1.01299 1.01144 0.93303 0.86746 0.87349 0.87452 0.87370 0.86465 0.85257 0.91532 0.92255 0.91197 0.93018 0.93052 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.03 55.49 0.61 -24.20 16 2 C 0.01 0.24 4.92 -17.45 -0.09 0.16 16 3 Si 0.90 21.30 29.60 -169.99 -5.03 16.27 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.26 -7.09 9.57 -15.11 -0.14 -7.23 16 8 H 0.07 1.89 7.91 -52.49 -0.42 1.47 16 9 N -0.55 -13.63 2.74 -105.21 -0.29 -13.92 16 10 C 0.22 4.86 3.82 -83.84 -0.32 4.54 16 11 C -0.14 -2.81 8.46 -39.34 -0.33 -3.14 16 12 C -0.12 -2.08 10.04 -39.62 -0.40 -2.48 16 13 C -0.15 -2.49 10.04 -39.51 -0.40 -2.88 16 14 C -0.12 -2.16 10.04 -39.62 -0.40 -2.56 16 15 C -0.13 -2.78 8.72 -39.34 -0.34 -3.12 16 16 C 0.19 4.41 3.46 -67.12 -0.23 4.18 16 17 C -0.16 -3.30 7.56 -25.83 -0.20 -3.49 16 18 C -0.14 -2.60 8.09 -25.84 -0.21 -2.80 16 19 C -0.18 -3.55 7.64 -25.92 -0.20 -3.75 16 20 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 21 H 0.11 2.24 7.92 -52.49 -0.42 1.82 16 22 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 23 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 24 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 25 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 26 H 0.13 3.41 5.61 -51.93 -0.29 3.12 16 27 H 0.07 1.42 6.18 -51.93 -0.32 1.10 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.41 6.09 -51.93 -0.32 1.10 16 LS Contribution 263.85 15.07 3.98 3.98 Total: -1.00 -27.68 263.85 -8.26 -35.94 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.28 Total: 4.51 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.25 Total: -22.58 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.32 Total: -38.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.68 -8.26 -35.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143153.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.787 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds