Wall clock time and date at job start Mon Mar 30 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86796 * 120.00157 * 2 1 4 4 H 1.48501 * 109.47372 * 239.99934 * 3 2 1 5 5 H 1.48498 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47080 * 119.99658 * 3 2 1 7 7 C 1.38799 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00242 * 201.06063 * 7 2 1 9 9 N 1.36849 * 119.99951 * 21.05489 * 7 2 1 10 10 C 1.39299 * 120.00115 * 205.86942 * 9 7 2 11 11 C 1.39087 * 120.08570 * 268.18216 * 10 9 7 12 12 C 1.38044 * 119.90901 * 180.29895 * 11 10 9 13 13 C 1.38334 * 120.09056 * 359.46638 * 12 11 10 14 14 C 1.38330 * 120.17727 * 0.51729 * 13 12 11 15 15 C 1.38048 * 120.09055 * 359.75918 * 14 13 12 16 16 C 1.46505 * 119.99941 * 25.86710 * 9 7 2 17 17 C 1.53777 * 113.61579 * 223.70415 * 16 9 7 18 18 C 1.53947 * 87.01993 * 220.05065 * 17 16 9 19 19 C 1.53772 * 87.11297 * 25.36344 * 18 17 16 20 20 H 0.96999 * 120.00443 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.04502 * 0.02633 * 11 10 9 22 22 H 1.08000 * 119.95739 * 179.72805 * 12 11 10 23 23 H 1.08004 * 119.91349 * 180.23613 * 13 12 11 24 24 H 1.08003 * 119.95806 * 179.74180 * 14 13 12 25 25 H 1.08002 * 120.05002 * 179.97438 * 15 14 13 26 26 H 1.08993 * 112.84841 * 354.90198 * 16 9 7 27 27 H 1.08996 * 113.61370 * 334.57309 * 17 16 9 28 28 H 1.08998 * 113.61385 * 105.47006 * 17 16 9 29 29 H 1.09000 * 113.53445 * 270.80996 * 18 17 16 30 30 H 1.09000 * 113.66900 * 139.93937 * 18 17 16 31 31 H 1.09000 * 113.61662 * 220.09122 * 19 18 17 32 32 H 1.09002 * 113.69407 * 89.20136 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1037 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1036 1.6963 1.2126 7 6 2.0099 -1.2020 -0.0005 8 1 3.0358 -1.2334 0.3355 9 7 1.3942 -2.3474 -0.4268 10 6 1.8257 -3.5861 0.0421 11 6 2.7911 -4.2997 -0.6602 12 6 3.2116 -5.5297 -0.1955 13 6 2.6822 -6.0477 0.9729 14 6 1.7221 -5.3409 1.6745 15 6 1.2921 -4.1128 1.2135 16 6 0.2811 -2.2709 -1.3764 17 6 -0.8974 -3.1921 -1.0196 18 6 -1.0114 -3.4954 -2.5246 19 6 0.4805 -3.1383 -2.6304 20 1 -0.4851 0.8400 -0.0004 21 1 3.2080 -3.8941 -1.5702 22 1 3.9580 -6.0865 -0.7425 23 1 3.0160 -7.0086 1.3359 24 1 1.3081 -5.7506 2.5840 25 1 0.5421 -3.5618 1.7615 26 1 -0.0171 -1.2460 -1.5972 27 1 -0.6103 -4.0562 -0.4206 28 1 -1.7588 -2.6617 -0.6137 29 1 -1.6645 -2.8056 -3.0594 30 1 -1.2270 -4.5408 -2.7452 31 1 0.7300 -2.5646 -3.5230 32 1 1.1462 -3.9869 -2.4731 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143153.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:23 Heat of formation + Delta-G solvation = 55.244838 kcal Electronic energy + Delta-G solvation = -14709.026386 eV Core-core repulsion = 12442.243262 eV Total energy + Delta-G solvation = -2266.783124 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62886 -38.73231 -35.79777 -33.35639 -31.63115 -29.86729 -26.72308 -26.29084 -24.74608 -23.10224 -22.15588 -20.10117 -19.17499 -17.57082 -16.87063 -16.46206 -16.02195 -15.71615 -15.32249 -14.80132 -14.13953 -13.63873 -13.55021 -13.26034 -13.05874 -12.95407 -12.78653 -12.50106 -12.30817 -12.00096 -11.90929 -11.42802 -11.21259 -11.02452 -10.43872 -9.65100 -9.28674 -8.79912 -7.93060 -5.40985 0.67195 0.70177 1.44734 1.47378 1.54408 2.47599 3.08796 3.21168 3.58936 4.00206 4.06663 4.24612 4.28310 4.29478 4.42936 4.55042 4.78546 4.86891 4.90468 5.00072 5.05952 5.12749 5.24801 5.29787 5.36083 5.52315 5.63554 5.69638 5.75695 5.91945 6.10792 6.22133 6.46384 7.11811 7.93254 8.31720 9.10689 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.011888 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.739763 B = 2354.799813 C = 2914.521321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.037 4.037 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.274 4.274 8 H 0.058 0.942 9 N -0.561 5.561 10 C 0.184 3.816 11 C -0.153 4.153 12 C -0.113 4.113 13 C -0.140 4.140 14 C -0.118 4.118 15 C -0.156 4.156 16 C 0.169 3.831 17 C -0.152 4.152 18 C -0.121 4.121 19 C -0.165 4.165 20 H 0.253 0.747 21 H 0.110 0.890 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.137 0.863 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -9.916 -2.005 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.234 4.234 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.402 4.402 8 H 0.076 0.924 9 N -0.276 5.276 10 C 0.091 3.909 11 C -0.173 4.173 12 C -0.131 4.131 13 C -0.157 4.157 14 C -0.136 4.136 15 C -0.177 4.177 16 C 0.062 3.938 17 C -0.191 4.191 18 C -0.158 4.158 19 C -0.204 4.204 20 H 0.063 0.937 21 H 0.128 0.872 22 H 0.163 0.837 23 H 0.169 0.831 24 H 0.154 0.846 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.152 -9.728 -1.989 10.160 hybrid contribution 0.082 1.355 0.260 1.382 sum 2.234 -8.373 -1.729 8.837 Atomic orbital electron populations 1.70147 1.06413 1.26163 1.53404 1.25642 0.95961 1.01173 1.00588 0.85388 0.77800 0.79261 0.78281 1.20405 1.21488 1.20415 1.19280 0.94232 0.86381 1.40344 0.92390 1.41609 1.37815 0.99948 1.48222 1.18016 0.93266 0.87451 0.92180 1.21774 0.98326 0.96397 1.00830 1.21308 1.00091 0.94809 0.96910 1.21359 0.97735 1.01006 0.95632 1.21280 0.97955 0.94011 1.00366 1.21844 1.01019 0.96882 0.97934 1.22034 0.85987 0.98386 0.87354 1.23361 0.99601 0.99547 0.96634 1.22575 0.96212 1.01410 0.95635 1.23640 0.96842 1.00561 0.99393 0.93731 0.87219 0.83650 0.83117 0.84566 0.89319 0.88626 0.91832 0.94048 0.90041 0.90312 0.92489 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.20 11.03 21.65 0.24 -52.96 16 2 C -0.04 -2.06 4.92 84.86 0.42 -1.64 16 3 Si 0.97 44.99 29.60 68.60 2.03 47.02 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.27 -15.45 9.57 84.04 0.80 -14.64 16 8 H 0.06 3.30 7.91 -2.91 -0.02 3.28 16 9 N -0.56 -28.86 2.74 -486.76 -1.34 -30.20 16 10 C 0.18 8.28 3.82 38.36 0.15 8.43 16 11 C -0.15 -5.89 8.46 22.43 0.19 -5.70 16 12 C -0.11 -3.40 10.04 22.25 0.22 -3.18 16 13 C -0.14 -3.92 10.04 22.31 0.22 -3.69 16 14 C -0.12 -3.84 10.04 22.25 0.22 -3.62 16 15 C -0.16 -6.59 8.72 22.43 0.20 -6.40 16 16 C 0.17 8.17 3.46 45.51 0.16 8.32 16 17 C -0.15 -6.58 7.56 31.18 0.24 -6.34 16 18 C -0.12 -4.25 8.09 31.17 0.25 -4.00 16 19 C -0.16 -6.54 7.64 31.12 0.24 -6.30 16 20 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 21 H 0.11 4.23 7.92 -2.91 -0.02 4.20 16 22 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 23 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 24 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 25 H 0.09 4.14 8.06 -2.91 -0.02 4.12 16 26 H 0.10 5.29 5.61 -2.39 -0.01 5.28 16 27 H 0.06 2.76 6.18 -2.39 -0.01 2.74 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.89 6.09 -2.39 -0.01 2.88 16 Total: -1.00 -61.98 263.85 5.33 -56.65 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.09 Total: 18.25 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 3.31 Total: -38.77 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -1.10 Total: -83.16 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -61.98 5.33 -56.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143153.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.894 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds