Wall clock time and date at job start Mon Mar 30 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47472 * 2 1 4 4 C 1.50710 * 109.47042 * 240.00362 * 2 1 3 5 5 H 1.08001 * 119.99466 * 245.35744 * 4 2 1 6 6 C 1.37874 * 119.99938 * 65.36173 * 4 2 1 7 7 N 1.31514 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99756 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47335 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47346 * 119.99629 * 8 6 4 11 11 H 1.48501 * 109.46772 * 239.99823 * 8 6 4 12 12 C 1.52993 * 109.47276 * 120.00535 * 2 1 3 13 13 C 1.50701 * 115.55330 * 65.23228 * 12 2 1 14 14 C 1.38664 * 120.42281 * 112.39749 * 13 12 2 15 15 C 1.38627 * 118.42285 * 180.23109 * 14 13 12 16 16 C 1.38224 * 119.15890 * 359.52379 * 15 14 13 17 17 N 1.31852 * 120.76506 * 0.48765 * 16 15 14 18 18 C 1.31881 * 121.72785 * 359.73843 * 17 16 15 19 19 C 1.53008 * 117.49936 * 210.90453 * 12 2 1 20 20 C 1.53001 * 117.49801 * 279.56370 * 12 2 1 21 21 H 1.08995 * 109.46901 * 300.00050 * 1 2 3 22 22 H 1.08999 * 109.47032 * 59.99880 * 1 2 3 23 23 H 1.08997 * 109.46804 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99865 * 180.02562 * 7 6 4 25 25 H 1.08004 * 120.78716 * 359.95808 * 14 13 12 26 26 H 1.08001 * 120.41924 * 179.74563 * 15 14 13 27 27 H 1.08007 * 119.61335 * 180.23056 * 16 15 14 28 28 H 1.07994 * 119.62382 * 180.02562 * 18 17 16 29 29 H 1.09005 * 117.49436 * 214.99798 * 19 12 2 30 30 H 1.08994 * 117.49647 * 0.02562 * 19 12 2 31 31 H 1.09002 * 117.49897 * 359.97089 * 20 12 2 32 32 H 1.09004 * 117.50466 * 144.97123 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.5800 -1.6362 -1.1338 6 6 1.7928 -0.1783 -2.4798 7 7 1.1255 0.9488 -2.5975 8 14 2.4149 -1.0592 -4.0051 9 1 3.1303 -2.2974 -3.6045 10 1 1.2654 -1.4113 -4.8768 11 1 3.3440 -0.1690 -4.7464 12 6 2.0400 -0.7213 1.2491 13 6 1.7197 -2.1918 1.3269 14 6 2.7315 -3.1363 1.2428 15 6 2.3895 -4.4778 1.3143 16 6 1.0619 -4.8267 1.4759 17 7 0.1258 -3.9012 1.5522 18 6 0.4139 -2.6161 1.4834 19 6 3.3734 -0.2566 1.8383 20 6 2.0629 0.0670 2.5602 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.9567 1.3229 -3.4765 25 1 3.7611 -2.8340 1.1200 26 1 3.1513 -5.2406 1.2482 27 1 0.7876 -5.8696 1.5363 28 1 -0.3798 -1.8868 1.5501 29 1 4.0189 -1.0146 2.2822 30 1 3.8870 0.5632 1.3363 31 1 1.7151 1.0996 2.5327 32 1 1.8459 -0.4779 3.4790 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:52 Heat of formation + Delta-G solvation = 34.743876 kcal Electronic energy + Delta-G solvation = -14582.897960 eV Core-core repulsion = 12315.225848 eV Total energy + Delta-G solvation = -2267.672112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26344 -38.72133 -35.19162 -33.08166 -32.17280 -31.38016 -27.27681 -25.14299 -24.44800 -23.36569 -22.82077 -20.12525 -18.50886 -17.67559 -17.03040 -16.75279 -16.13029 -15.45501 -15.15473 -14.62766 -14.34990 -13.86814 -13.74927 -13.32726 -13.08395 -12.87632 -12.77253 -12.37112 -12.22178 -12.15316 -11.50367 -11.23975 -11.00633 -10.59703 -10.45909 -10.39878 -10.12464 -9.58651 -8.08484 -6.16989 0.35391 0.49568 1.36316 1.39447 1.48843 2.42374 2.95344 3.10366 3.24015 3.62696 3.89643 4.07314 4.12115 4.19049 4.26518 4.49669 4.55555 4.81699 4.85049 4.91118 4.95832 5.03360 5.12404 5.28231 5.33346 5.37468 5.40478 5.61377 5.64045 5.88494 6.00561 6.08172 6.41660 6.92781 7.15439 7.49686 8.98575 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.024678 B = 0.011771 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.326974 B = 2378.209028 C = 2827.237209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.084 3.916 3 H 0.004 0.996 4 C -0.506 4.506 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.941 3.059 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.280 1.280 12 C -0.081 4.081 13 C -0.067 4.067 14 C -0.087 4.087 15 C -0.167 4.167 16 C 0.070 3.930 17 N -0.510 5.510 18 C 0.084 3.916 19 C -0.164 4.164 20 C -0.164 4.164 21 H 0.032 0.968 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.258 0.742 25 H 0.140 0.860 26 H 0.165 0.835 27 H 0.181 0.819 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -7.535 8.857 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.022 0.978 4 C -0.544 4.544 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.768 3.232 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.206 1.206 12 C -0.082 4.082 13 C -0.069 4.069 14 C -0.113 4.113 15 C -0.186 4.186 16 C -0.087 4.087 17 N -0.219 5.219 18 C -0.072 4.072 19 C -0.201 4.201 20 C -0.201 4.201 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.157 0.843 26 H 0.182 0.818 27 H 0.198 0.802 28 H 0.166 0.834 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.583 -7.675 8.830 11.981 hybrid contribution 0.968 0.321 -1.396 1.729 sum 3.551 -7.355 7.434 11.044 Atomic orbital electron populations 1.21746 0.98637 0.99089 0.99114 1.18107 0.92282 0.93295 0.89728 0.97766 1.21405 1.33815 1.07665 0.91511 0.93176 1.25635 0.95795 0.95665 1.01559 1.70042 1.41924 1.20395 1.23740 0.85751 0.78049 0.78980 0.80407 1.19288 1.21234 1.20631 1.20237 1.01993 0.90670 0.95308 1.20037 0.94439 0.94692 0.97693 1.21721 1.00133 0.93214 0.96184 1.22411 0.98608 0.96682 1.00936 1.23209 0.89306 0.99852 0.96371 1.67657 1.38652 1.02004 1.13546 1.22684 0.95540 0.92415 0.96541 1.22980 0.90544 1.03318 1.03210 1.23058 1.01282 1.00738 0.94990 0.94912 0.93980 0.94584 0.93288 0.84264 0.81758 0.80167 0.83445 0.87662 0.89666 0.88963 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.20 71.98 0.59 -5.53 16 2 C 0.08 4.11 2.04 -11.54 -0.02 4.08 16 3 H 0.00 0.23 8.09 -2.39 -0.02 0.21 16 4 C -0.51 -27.28 8.10 25.60 0.21 -27.07 16 5 H 0.05 2.70 7.06 -2.91 -0.02 2.68 16 6 C 0.01 0.63 5.32 84.65 0.45 1.08 16 7 N -0.92 -53.56 11.72 21.45 0.25 -53.31 16 8 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C -0.08 -3.17 1.31 -52.93 -0.07 -3.24 16 13 C -0.07 -2.49 4.20 -19.77 -0.08 -2.57 16 14 C -0.09 -2.81 9.08 22.46 0.20 -2.60 16 15 C -0.17 -4.53 10.11 22.36 0.23 -4.30 16 16 C 0.07 2.01 11.18 84.69 0.95 2.95 16 17 N -0.51 -18.18 10.36 -195.84 -2.03 -20.21 16 18 C 0.08 3.18 9.42 84.67 0.80 3.97 16 19 C -0.16 -5.46 9.45 30.62 0.29 -5.17 16 20 C -0.16 -5.30 9.96 30.62 0.30 -4.99 16 21 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 2.25 6.51 -2.39 -0.02 2.24 16 23 H 0.04 1.67 5.39 -2.39 -0.01 1.66 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.14 4.11 7.26 -2.91 -0.02 4.09 16 26 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 27 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.15 5.62 6.17 -2.91 -0.02 5.60 16 29 H 0.11 2.98 7.30 -2.38 -0.02 2.96 16 30 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -62.27 266.09 5.19 -57.08 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.10 Total: 13.59 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 3.84 Total: -43.39 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.78 Total: -73.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.27 5.19 -57.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.820 kcal (2) G-P(sol) polarization free energy of solvation -62.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds