Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38057 * 119.81686 * 2 1 4 4 C 1.38218 * 119.87202 * 180.27011 * 3 2 1 5 5 C 1.38080 * 119.82683 * 359.58605 * 4 3 2 6 6 C 1.38628 * 120.34602 * 0.52025 * 5 4 3 7 7 C 1.37885 * 119.85219 * 359.53341 * 6 5 4 8 8 C 1.50622 * 121.83629 * 180.58136 * 7 6 5 9 9 N 1.46626 * 110.50334 * 342.26800 * 8 7 6 10 10 C 1.47158 * 110.27954 * 52.52697 * 9 8 7 11 11 H 1.09002 * 109.62883 * 48.48663 * 10 9 8 12 12 C 1.50695 * 109.63164 * 169.07667 * 10 9 8 13 13 H 1.08003 * 120.00139 * 119.02276 * 12 10 9 14 14 C 1.37877 * 120.00179 * 299.01855 * 12 10 9 15 15 N 1.31522 * 119.99500 * 0.02562 * 14 12 10 16 16 Si 1.86792 * 120.00350 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47528 * 90.00160 * 16 14 12 18 18 H 1.48508 * 109.47090 * 210.00474 * 16 14 12 19 19 H 1.48502 * 109.47168 * 329.99859 * 16 14 12 20 20 C 1.50712 * 118.49535 * 179.31011 * 6 5 4 21 21 H 1.09005 * 109.46797 * 89.99936 * 1 2 3 22 22 H 1.08997 * 109.47604 * 210.00581 * 1 2 3 23 23 H 1.09005 * 109.46879 * 330.00862 * 1 2 3 24 24 H 1.08002 * 120.06055 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.08672 * 179.83667 * 4 3 2 26 26 H 1.08000 * 119.82938 * 180.22830 * 5 4 3 27 27 H 1.08994 * 109.27530 * 102.53409 * 8 7 6 28 28 H 1.08998 * 109.26809 * 222.00736 * 8 7 6 29 29 H 1.00901 * 110.99766 * 289.08802 * 9 8 7 30 30 H 0.97001 * 119.99366 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.39163 * 283.18511 * 20 6 5 32 32 H 1.09003 * 109.39059 * 42.89528 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1978 0.0000 4 6 3.5756 1.1991 -0.0057 5 6 4.2636 0.0019 -0.0026 6 6 3.5753 -1.2014 -0.0048 7 6 2.1964 -1.2034 -0.0003 8 6 1.4038 -2.4841 0.0106 9 7 2.2445 -3.6119 -0.4032 10 6 3.4759 -3.6523 0.4015 11 1 3.2258 -3.5617 1.4585 12 6 4.1977 -4.9524 0.1575 13 1 5.1955 -4.9469 -0.2558 14 6 3.5844 -6.1491 0.4621 15 7 2.3692 -6.1559 0.9650 16 14 4.4788 -7.7608 0.1590 17 1 5.2515 -8.1336 1.3711 18 1 3.4898 -8.8262 -0.1448 19 1 5.4060 -7.6039 -0.9903 20 6 4.3680 -2.4831 -0.0173 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6515 2.1320 -0.0004 25 1 4.1161 2.1341 -0.0083 26 1 5.3436 0.0029 -0.0033 27 1 1.0279 -2.6660 1.0173 28 1 0.5621 -2.3920 -0.6759 29 1 2.4576 -3.5618 -1.3881 30 1 1.9375 -6.9978 1.1789 31 1 4.7511 -2.6620 -1.0220 32 1 5.2036 -2.3987 0.6775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = 14.601788 kcal Electronic energy + Delta-G solvation = -14388.141733 eV Core-core repulsion = 12119.596195 eV Total energy + Delta-G solvation = -2268.545539 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61615 -35.93201 -33.28021 -32.30714 -29.96614 -29.22183 -26.42470 -25.01846 -23.47230 -21.50219 -20.35844 -19.07145 -16.63456 -15.71323 -15.13788 -14.46430 -14.33712 -13.78635 -13.55163 -13.32245 -12.80069 -12.47252 -12.22911 -12.18769 -11.85447 -11.43629 -10.97367 -10.90674 -10.74151 -10.61185 -10.39334 -10.26983 -9.66465 -8.93858 -8.38168 -8.12169 -8.01880 -6.90278 -5.85421 -3.99209 1.75733 1.82712 3.35575 3.42734 3.45217 4.13934 4.50009 5.16401 5.20534 5.31917 5.36410 5.47704 5.62347 5.76252 5.83573 5.93353 5.99547 6.07297 6.20638 6.33851 6.39731 6.49081 6.56932 6.64151 6.86542 6.88448 6.98223 7.28108 7.46103 7.50577 7.93705 8.24746 8.58949 8.86934 9.13965 9.69472 11.19740 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.049945 B = 0.008024 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.481918 B = 3488.593918 C = 3962.243891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.128 4.128 5 C -0.133 4.133 6 C -0.063 4.063 7 C -0.110 4.110 8 C 0.094 3.906 9 N -0.641 5.641 10 C 0.222 3.778 11 H 0.039 0.961 12 C -0.535 4.535 13 H 0.054 0.946 14 C 0.084 3.916 15 N -0.850 5.850 16 Si 0.884 3.116 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.113 4.113 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.318 0.682 30 H 0.255 0.745 31 H 0.067 0.933 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 11.402 -2.008 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.155 4.155 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.063 4.063 7 C -0.112 4.112 8 C -0.036 4.036 9 N -0.267 5.267 10 C 0.115 3.885 11 H 0.057 0.943 12 C -0.573 4.573 13 H 0.073 0.927 14 C -0.123 4.123 15 N -0.484 5.484 16 Si 0.712 3.288 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.152 4.152 21 H 0.084 0.916 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.910 10.778 -1.540 11.054 hybrid contribution 1.052 0.089 -0.510 1.173 sum -0.858 10.866 -2.051 11.092 Atomic orbital electron populations 1.20793 0.91735 1.02539 1.01918 1.19878 0.95761 0.92772 1.00565 1.20825 0.94244 0.97002 1.03422 1.20927 0.94314 0.97466 1.01915 1.21112 0.99438 0.92262 1.02263 1.20050 0.93383 0.95806 0.97067 1.20874 0.94143 0.96870 0.99291 1.21033 0.95634 0.85693 1.01272 1.61362 1.20684 1.37890 1.06764 1.19150 0.84734 0.90696 0.93967 0.94293 1.20936 1.00729 0.90335 1.45336 0.92747 1.24950 0.94463 0.98593 0.94286 1.70090 1.12172 1.25588 1.40588 0.86765 0.79552 0.84064 0.78455 1.20853 1.21299 1.20039 1.21444 0.99104 0.93181 1.01506 0.91554 0.91073 0.92187 0.86986 0.86937 0.86801 0.90640 0.91689 0.86607 0.93467 0.91510 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.19 36.01 0.33 -1.16 16 2 C -0.09 -1.45 5.88 -104.52 -0.62 -2.06 16 3 C -0.14 -2.04 9.69 -39.65 -0.38 -2.43 16 4 C -0.13 -1.93 10.05 -39.65 -0.40 -2.32 16 5 C -0.13 -2.24 9.66 -39.50 -0.38 -2.62 16 6 C -0.06 -1.22 5.77 -104.60 -0.60 -1.82 16 7 C -0.11 -2.07 5.79 -104.62 -0.61 -2.68 16 8 C 0.09 1.90 5.13 -5.16 -0.03 1.87 16 9 N -0.64 -15.13 5.94 -109.34 -0.65 -15.78 16 10 C 0.22 5.53 2.29 -68.78 -0.16 5.37 16 11 H 0.04 1.09 8.05 -51.93 -0.42 0.67 16 12 C -0.53 -14.60 8.75 -34.44 -0.30 -14.90 16 13 H 0.05 1.46 7.75 -52.48 -0.41 1.05 16 14 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16 15 N -0.85 -24.60 12.82 55.43 0.71 -23.89 16 16 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.11 -2.40 5.08 -27.93 -0.14 -2.54 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.95 6.77 -51.93 -0.35 0.60 16 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 25 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.08 1.61 8.13 -51.93 -0.42 1.19 16 28 H 0.06 1.18 7.24 -51.93 -0.38 0.80 16 29 H 0.32 7.25 8.74 -39.29 -0.34 6.91 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 263.91 15.07 3.98 3.98 Total: -1.00 -29.07 263.91 -8.77 -37.84 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.41 Total: 4.75 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -3.38 Total: -23.06 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.06 Total: -39.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.07 -8.77 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.446 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds