Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38057 * 119.81686 * 2 1 4 4 C 1.38218 * 119.87202 * 180.27011 * 3 2 1 5 5 C 1.38080 * 119.82683 * 359.58605 * 4 3 2 6 6 C 1.38628 * 120.34602 * 0.52025 * 5 4 3 7 7 C 1.37885 * 119.85219 * 359.53341 * 6 5 4 8 8 C 1.50622 * 121.83629 * 180.58136 * 7 6 5 9 9 N 1.46626 * 110.50334 * 342.26800 * 8 7 6 10 10 C 1.47158 * 110.27954 * 52.52697 * 9 8 7 11 11 H 1.09002 * 109.62883 * 48.48663 * 10 9 8 12 12 C 1.50695 * 109.63164 * 169.07667 * 10 9 8 13 13 H 1.08003 * 120.00139 * 119.02276 * 12 10 9 14 14 C 1.37877 * 120.00179 * 299.01855 * 12 10 9 15 15 N 1.31522 * 119.99500 * 0.02562 * 14 12 10 16 16 Si 1.86792 * 120.00350 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47528 * 90.00160 * 16 14 12 18 18 H 1.48508 * 109.47090 * 210.00474 * 16 14 12 19 19 H 1.48502 * 109.47168 * 329.99859 * 16 14 12 20 20 C 1.50712 * 118.49535 * 179.31011 * 6 5 4 21 21 H 1.09005 * 109.46797 * 89.99936 * 1 2 3 22 22 H 1.08997 * 109.47604 * 210.00581 * 1 2 3 23 23 H 1.09005 * 109.46879 * 330.00862 * 1 2 3 24 24 H 1.08002 * 120.06055 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.08672 * 179.83667 * 4 3 2 26 26 H 1.08000 * 119.82938 * 180.22830 * 5 4 3 27 27 H 1.08994 * 109.27530 * 102.53409 * 8 7 6 28 28 H 1.08998 * 109.26809 * 222.00736 * 8 7 6 29 29 H 1.00901 * 110.99766 * 289.08802 * 9 8 7 30 30 H 0.97001 * 119.99366 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.39163 * 283.18511 * 20 6 5 32 32 H 1.09003 * 109.39059 * 42.89528 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1978 0.0000 4 6 3.5756 1.1991 -0.0057 5 6 4.2636 0.0019 -0.0026 6 6 3.5753 -1.2014 -0.0048 7 6 2.1964 -1.2034 -0.0003 8 6 1.4038 -2.4841 0.0106 9 7 2.2445 -3.6119 -0.4032 10 6 3.4759 -3.6523 0.4015 11 1 3.2258 -3.5617 1.4585 12 6 4.1977 -4.9524 0.1575 13 1 5.1955 -4.9469 -0.2558 14 6 3.5844 -6.1491 0.4621 15 7 2.3692 -6.1559 0.9650 16 14 4.4788 -7.7608 0.1590 17 1 5.2515 -8.1336 1.3711 18 1 3.4898 -8.8262 -0.1448 19 1 5.4060 -7.6039 -0.9903 20 6 4.3680 -2.4831 -0.0173 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6515 2.1320 -0.0004 25 1 4.1161 2.1341 -0.0083 26 1 5.3436 0.0029 -0.0033 27 1 1.0279 -2.6660 1.0173 28 1 0.5621 -2.3920 -0.6759 29 1 2.4576 -3.5618 -1.3881 30 1 1.9375 -6.9978 1.1789 31 1 4.7511 -2.6620 -1.0220 32 1 5.2036 -2.3987 0.6775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -3.030239 kcal Electronic energy + Delta-G solvation = -14388.906315 eV Core-core repulsion = 12119.596195 eV Total energy + Delta-G solvation = -2269.310121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01715 -37.57557 -34.66849 -34.25632 -31.45304 -30.89492 -27.64870 -26.92310 -25.05181 -23.22606 -21.65721 -20.70335 -18.63742 -17.00920 -16.74066 -16.17942 -15.97707 -15.35480 -15.07850 -14.76148 -14.42864 -13.85355 -13.78199 -13.55567 -13.15538 -13.10232 -12.81743 -12.50091 -12.38438 -12.21238 -11.93934 -11.79103 -11.61748 -10.92977 -10.51896 -9.40700 -9.38210 -8.71042 -7.96824 -6.18517 0.48875 0.51311 1.44810 1.45749 1.55478 2.48052 2.84907 3.24048 3.89484 3.97263 4.03803 4.15178 4.19193 4.46235 4.48108 4.55536 4.65692 4.76863 4.84635 4.88452 4.91081 5.02325 5.06174 5.29375 5.37452 5.46410 5.61176 5.70151 5.78334 5.88471 6.18496 6.23319 6.60984 7.01815 7.10735 7.54181 9.07296 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.049945 B = 0.008024 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.481918 B = 3488.593918 C = 3962.243891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.141 4.141 6 C -0.091 4.091 7 C -0.135 4.135 8 C 0.103 3.897 9 N -0.660 5.660 10 C 0.225 3.775 11 H -0.003 1.003 12 C -0.553 4.553 13 H 0.053 0.947 14 C 0.034 3.966 15 N -0.883 5.883 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.101 4.101 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.319 0.681 30 H 0.255 0.745 31 H 0.064 0.936 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 13.415 -2.700 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.159 4.159 6 C -0.091 4.091 7 C -0.137 4.137 8 C -0.027 4.027 9 N -0.287 5.287 10 C 0.117 3.883 11 H 0.015 0.985 12 C -0.591 4.591 13 H 0.072 0.928 14 C -0.170 4.170 15 N -0.519 5.519 16 Si 0.777 3.223 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.140 4.140 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.167 0.833 25 H 0.167 0.833 26 H 0.146 0.854 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.809 12.803 -2.234 13.122 hybrid contribution 0.999 -0.429 -0.276 1.122 sum -0.810 12.374 -2.510 12.653 Atomic orbital electron populations 1.20844 0.89652 1.03340 1.03027 1.20204 0.97409 0.92225 0.99477 1.21281 0.94508 0.97777 1.01436 1.21363 0.94706 0.98029 0.99670 1.21295 1.00341 0.92041 1.02232 1.19994 0.93734 0.95767 0.99640 1.20750 0.94091 0.97150 1.01704 1.20876 0.95761 0.85778 1.00315 1.61132 1.20483 1.40454 1.06585 1.18876 0.85948 0.91573 0.91853 0.98538 1.21323 1.00964 0.91763 1.45075 0.92835 1.25718 0.95196 1.01982 0.94066 1.70230 1.13663 1.26293 1.41730 0.85694 0.78357 0.79725 0.78497 1.20302 1.21088 1.19345 1.21157 0.98542 0.93218 1.01042 0.90160 0.92083 0.89642 0.83345 0.83314 0.85416 0.92909 0.89851 0.86428 0.93583 0.91765 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 9.19 71.24 0.65 -2.00 16 2 C -0.09 -2.80 5.88 -19.80 -0.12 -2.92 16 3 C -0.13 -3.41 9.69 22.22 0.22 -3.19 16 4 C -0.12 -3.14 10.05 22.23 0.22 -2.92 16 5 C -0.14 -4.50 9.66 22.33 0.22 -4.28 16 6 C -0.09 -3.53 5.77 -19.85 -0.11 -3.65 16 7 C -0.13 -5.08 5.79 -19.87 -0.12 -5.20 16 8 C 0.10 4.26 5.13 85.58 0.44 4.70 16 9 N -0.66 -32.39 5.94 -499.86 -2.97 -35.36 16 10 C 0.23 11.76 2.29 44.09 0.10 11.86 16 11 H 0.00 -0.20 8.05 -2.39 -0.02 -0.22 16 12 C -0.55 -31.11 8.75 25.60 0.22 -30.88 16 13 H 0.05 2.94 7.75 -2.91 -0.02 2.91 16 14 C 0.03 1.92 5.39 84.65 0.46 2.37 16 15 N -0.88 -52.72 12.82 21.45 0.27 -52.44 16 16 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.10 -4.38 5.08 29.82 0.15 -4.23 16 21 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.06 1.56 6.77 -2.39 -0.02 1.55 16 23 H 0.08 1.59 8.08 -2.38 -0.02 1.57 16 24 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 25 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 26 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 27 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 28 H 0.08 3.04 7.24 -2.39 -0.02 3.03 16 29 H 0.32 15.10 8.74 -89.69 -0.78 14.32 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.06 2.75 8.11 -2.39 -0.02 2.74 16 32 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -64.06 263.91 1.99 -62.07 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.32 Total: 19.80 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.33 Total: -40.33 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.69 Total: -87.81 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.06 1.99 -62.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.036 kcal (2) G-P(sol) polarization free energy of solvation -64.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds