Wall clock time and date at job start Mon Mar 30 2020 02:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46684 * 239.99460 * 3 2 1 6 6 H 1.48503 * 109.47389 * 119.99885 * 3 2 1 7 7 C 1.37886 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99652 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.91203 * 29.70918 * 9 7 2 11 11 N 1.47904 * 109.91359 * 150.81397 * 9 7 2 12 12 C 1.48535 * 105.81943 * 144.68025 * 11 9 7 13 13 C 1.54935 * 103.22874 * 320.79126 * 12 11 9 14 14 C 1.53997 * 109.91357 * 268.60450 * 9 7 2 15 15 H 1.08997 * 110.30717 * 120.51459 * 14 9 7 16 16 C 1.50702 * 110.31280 * 358.34071 * 14 9 7 17 17 C 1.38231 * 119.99718 * 292.02087 * 16 14 9 18 18 C 1.38237 * 119.99428 * 179.78842 * 17 16 14 19 19 C 1.38227 * 120.00281 * 0.43534 * 18 17 16 20 20 C 1.38237 * 119.99971 * 359.81917 * 19 18 17 21 21 C 1.38233 * 119.99485 * 112.28915 * 16 14 9 22 22 H 0.96995 * 120.00535 * 180.02562 * 1 2 3 23 23 H 1.00897 * 111.00250 * 24.16996 * 11 9 7 24 24 H 1.09003 * 110.66463 * 79.22275 * 12 11 9 25 25 H 1.08998 * 110.66750 * 202.35334 * 12 11 9 26 26 H 1.08999 * 110.72453 * 155.77037 * 13 12 11 27 27 H 1.08998 * 110.72665 * 279.05748 * 13 12 11 28 28 H 1.07999 * 120.00447 * 359.97438 * 17 16 14 29 29 H 1.08005 * 119.99549 * 180.27348 * 18 17 16 30 30 H 1.08005 * 120.00401 * 179.83307 * 19 18 17 31 31 H 1.08000 * 120.00098 * 180.02562 * 20 19 18 32 32 H 1.08001 * 120.00583 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6961 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.2946 -2.3756 -0.5078 11 7 2.0505 -3.5427 -0.6770 12 6 1.7694 -4.8057 0.0525 13 6 1.7123 -4.3545 1.5336 14 6 1.0185 -2.9707 1.4480 15 1 -0.0487 -3.0668 1.6479 16 6 1.6492 -2.0069 2.4198 17 6 3.0252 -1.8928 2.4852 18 6 3.6036 -1.0055 3.3736 19 6 2.8062 -0.2390 4.2027 20 6 1.4303 -0.3570 4.1409 21 6 0.8517 -1.2411 3.2495 22 1 -0.4851 -0.8400 0.0004 23 1 3.0341 -3.3200 -0.6485 24 1 0.8127 -5.2251 -0.2590 25 1 2.5739 -5.5252 -0.0998 26 1 1.1146 -5.0478 2.1253 27 1 2.7164 -4.2593 1.9468 28 1 3.6483 -2.4945 1.8403 29 1 4.6786 -0.9131 3.4216 30 1 3.2582 0.4523 4.8987 31 1 0.8073 0.2422 4.7884 32 1 -0.2233 -1.3332 3.2011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282748.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:12 Heat of formation + Delta-G solvation = 4.745898 kcal Electronic energy + Delta-G solvation = -15011.876968 eV Core-core repulsion = 12742.904046 eV Total energy + Delta-G solvation = -2268.972922 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76350 -38.51099 -34.78520 -32.83445 -31.58403 -30.14695 -28.66303 -25.99963 -23.46240 -23.15939 -22.26984 -20.72773 -19.04735 -17.35246 -16.55838 -16.27005 -15.76442 -15.65288 -15.38342 -15.10999 -14.33500 -14.03111 -13.70187 -13.37315 -13.18275 -12.58507 -12.53405 -12.35178 -12.08609 -11.95013 -11.93128 -11.47442 -11.39677 -10.58587 -10.43949 -9.57333 -9.53737 -9.00548 -8.45853 -6.13932 0.74701 0.78952 1.51085 1.58045 1.73459 2.58873 3.12075 3.26495 3.72972 3.86137 4.11638 4.21422 4.30995 4.34164 4.41595 4.50772 4.67441 4.70682 4.87807 4.89822 4.98336 5.12719 5.19363 5.28786 5.39220 5.44358 5.77717 5.78889 5.93496 6.06775 6.15672 6.37859 6.41325 6.65648 6.85816 7.58810 8.89954 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.017133 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.859904 B = 1633.894930 C = 2345.072468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.007 4.007 3 Si 1.085 2.915 4 H -0.292 1.292 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.048 0.952 9 C 0.193 3.807 10 H 0.007 0.993 11 N -0.682 5.682 12 C 0.041 3.959 13 C -0.140 4.140 14 C -0.083 4.083 15 H 0.040 0.960 16 C -0.010 4.010 17 C -0.100 4.100 18 C -0.135 4.135 19 C -0.146 4.146 20 C -0.132 4.132 21 C -0.143 4.143 22 H 0.255 0.745 23 H 0.332 0.668 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -4.753 7.221 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.208 4.208 3 Si 0.909 3.091 4 H -0.218 1.218 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.610 4.610 8 H 0.067 0.933 9 C 0.084 3.916 10 H 0.025 0.975 11 N -0.309 5.309 12 C -0.088 4.088 13 C -0.179 4.179 14 C -0.104 4.104 15 H 0.059 0.941 16 C -0.010 4.010 17 C -0.118 4.118 18 C -0.153 4.153 19 C -0.164 4.164 20 C -0.150 4.150 21 C -0.161 4.161 22 H 0.066 0.934 23 H 0.148 0.852 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.512 -3.232 6.606 9.191 hybrid contribution 0.010 -1.317 0.539 1.423 sum 5.522 -4.550 7.146 10.112 Atomic orbital electron populations 1.70889 1.07789 1.29723 1.48570 1.26480 0.96322 1.04853 0.93108 0.83338 0.74724 0.73235 0.77761 1.21836 1.20116 1.19425 1.21994 0.93598 0.91887 1.53482 0.93344 1.19897 0.93547 0.90711 0.87454 0.97482 1.62898 1.11860 1.02996 1.53158 1.23130 1.01861 0.93186 0.90672 1.23263 1.00816 0.95004 0.98801 1.21753 0.97003 0.94240 0.97380 0.94116 1.19388 0.93781 0.95582 0.92263 1.20776 0.94096 0.99397 0.97509 1.21286 1.00396 0.96949 0.96668 1.21221 0.93464 1.00732 1.00963 1.21192 0.95837 0.98590 0.99375 1.20943 0.98580 0.98591 0.98019 0.93396 0.85246 0.91383 0.89055 0.90541 0.90881 0.87216 0.84594 0.84255 0.85361 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.63 21.45 0.29 -55.28 16 2 C -0.01 -0.39 5.27 84.66 0.45 0.05 16 3 Si 1.08 50.71 29.90 68.60 2.05 52.77 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.57 -29.82 5.46 25.60 0.14 -29.68 16 8 H 0.05 2.52 7.06 -2.91 -0.02 2.49 16 9 C 0.19 9.39 3.17 44.31 0.14 9.53 16 10 H 0.01 0.41 6.52 -2.39 -0.02 0.40 16 11 N -0.68 -28.46 7.39 -484.01 -3.58 -32.04 16 12 C 0.04 1.36 7.55 86.65 0.65 2.02 16 13 C -0.14 -4.72 6.46 31.95 0.21 -4.51 16 14 C -0.08 -3.54 3.23 -10.51 -0.03 -3.57 16 15 H 0.04 1.82 7.96 -2.39 -0.02 1.80 16 16 C -0.01 -0.42 3.58 -19.87 -0.07 -0.49 16 17 C -0.10 -3.90 6.75 22.27 0.15 -3.75 16 18 C -0.14 -4.71 10.05 22.27 0.22 -4.48 16 19 C -0.15 -4.95 10.05 22.27 0.22 -4.73 16 20 C -0.13 -4.90 10.05 22.27 0.22 -4.68 16 21 C -0.14 -6.08 9.68 22.27 0.22 -5.86 16 22 H 0.26 15.53 6.58 -92.71 -0.61 14.92 16 23 H 0.33 13.36 8.27 -89.70 -0.74 12.62 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 2.35 6.31 -2.39 -0.02 2.33 16 28 H 0.11 4.12 7.05 -2.91 -0.02 4.10 16 29 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.09 4.09 7.99 -2.91 -0.02 4.06 16 Total: -1.00 -61.17 259.90 1.81 -59.36 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.53 Total: 25.35 kcal Atomic # 6 Polarization: -52.67 SS G_CDS: 2.52 Total: -50.15 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -3.29 Total: -87.32 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.77 kcal Total: -61.17 1.81 -59.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282748.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.102 kcal (2) G-P(sol) polarization free energy of solvation -61.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds