Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.66601 * 2 1 4 4 C 1.54616 * 110.74681 * 236.59926 * 2 1 3 5 5 N 1.48277 * 102.37415 * 215.91149 * 4 2 1 6 6 C 1.46897 * 110.58689 * 149.21486 * 5 4 2 7 7 C 1.40112 * 107.71635 * 27.75414 * 5 4 2 8 8 C 1.39873 * 129.78473 * 161.14085 * 7 5 4 9 9 C 1.38278 * 120.72866 * 179.36413 * 8 7 5 10 10 C 1.37687 * 120.54634 * 359.93056 * 9 8 7 11 11 C 1.40790 * 119.59106 * 0.08958 * 10 9 8 12 12 C 1.41403 * 120.21124 * 180.15735 * 11 10 9 13 13 H 1.08003 * 120.00428 * 150.55400 * 12 11 10 14 14 C 1.39926 * 120.00159 * 330.27838 * 12 11 10 15 15 N 1.30835 * 119.99855 * 349.44198 * 14 12 11 16 16 Si 1.86799 * 120.00274 * 169.43616 * 14 12 11 17 17 H 1.48505 * 109.47067 * 90.00438 * 16 14 12 18 18 H 1.48498 * 109.47525 * 210.00486 * 16 14 12 19 19 H 1.48496 * 109.47432 * 330.00368 * 16 14 12 20 20 C 1.38348 * 110.98680 * 340.99371 * 7 5 4 21 21 H 1.08999 * 109.47229 * 303.44895 * 1 2 3 22 22 H 1.09006 * 109.47000 * 63.44733 * 1 2 3 23 23 H 1.08995 * 109.46979 * 183.44479 * 1 2 3 24 24 H 1.09002 * 110.79301 * 334.55368 * 4 2 1 25 25 H 1.09000 * 110.80148 * 97.84601 * 4 2 1 26 26 H 1.08994 * 109.47007 * 300.37354 * 6 5 4 27 27 H 1.08994 * 109.47119 * 60.37716 * 6 5 4 28 28 H 1.09004 * 109.46943 * 180.37286 * 6 5 4 29 29 H 1.07998 * 119.63168 * 359.33646 * 8 7 5 30 30 H 1.08005 * 119.72505 * 179.97438 * 9 8 7 31 31 H 1.07995 * 120.20665 * 180.11487 * 10 9 8 32 32 H 0.97002 * 119.99905 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0777 -0.7960 -1.2071 5 7 3.2872 -1.4400 -0.6406 6 6 3.5395 -2.7308 -1.2948 7 6 3.0771 -1.6066 0.7346 8 6 3.7237 -2.4510 1.6430 9 6 3.3698 -2.4545 2.9797 10 6 2.3735 -1.6241 3.4419 11 6 1.7102 -0.7669 2.5433 12 6 0.6873 0.0936 3.0044 13 1 0.5080 1.0349 2.5061 14 6 -0.0964 -0.2768 4.1028 15 7 -0.0279 -1.4954 4.5740 16 14 -1.2405 0.9685 4.8964 17 1 -2.5715 0.9059 4.2409 18 1 -1.3851 0.6575 6.3412 19 1 -0.6744 2.3321 4.7379 20 6 2.0667 -0.7761 1.1857 21 1 -0.3633 0.5664 0.8574 22 1 -0.3633 0.4594 -0.9193 23 1 -0.3633 -1.0258 0.0617 24 1 1.3543 -1.5401 -1.5403 25 1 2.3449 -0.1254 -2.0238 26 1 2.6816 -3.3866 -1.1474 27 1 3.6970 -2.5728 -2.3617 28 1 4.4273 -3.1907 -0.8607 29 1 4.5078 -3.1079 1.2964 30 1 3.8795 -3.1135 3.6670 31 1 2.1027 -1.6300 4.4874 32 1 -0.5709 -1.7521 5.3357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = 8.517198 kcal Electronic energy + Delta-G solvation = -14662.531293 eV Core-core repulsion = 12393.721907 eV Total energy + Delta-G solvation = -2268.809386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.19289 -37.51267 -35.34509 -34.34682 -30.88395 -30.05880 -28.36854 -26.72743 -25.01708 -23.04503 -21.73828 -20.91826 -18.75088 -17.37857 -16.55830 -16.32799 -16.15162 -15.74149 -14.86331 -14.63596 -14.30162 -13.70394 -13.52553 -13.23393 -13.12303 -12.88561 -12.79754 -12.42868 -12.34647 -12.32709 -12.04604 -11.70651 -11.54538 -11.04573 -10.93079 -10.39195 -9.19258 -8.58144 -8.28876 -6.29068 1.00268 1.09080 1.39525 1.50211 1.53973 2.23386 2.77089 3.08462 3.70912 3.90869 4.06667 4.35177 4.39251 4.55245 4.59814 4.66249 4.75408 4.80362 4.84417 4.94811 5.14641 5.15898 5.21543 5.32862 5.34929 5.48178 5.58656 5.92470 6.01421 6.11257 6.20344 6.29793 6.58029 6.79123 7.02110 7.10758 8.43275 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035926 B = 0.010802 C = 0.008728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.190149 B = 2591.474977 C = 3207.197874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.037 4.037 3 H 0.068 0.932 4 C 0.054 3.946 5 N -0.488 5.488 6 C 0.021 3.979 7 C 0.091 3.909 8 C -0.248 4.248 9 C -0.096 4.096 10 C -0.201 4.201 11 C 0.112 3.888 12 C -0.479 4.479 13 H 0.077 0.923 14 C 0.033 3.967 15 N -0.835 5.835 16 Si 0.975 3.025 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.259 1.259 20 C -0.248 4.248 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.024 0.976 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 0.742 -7.180 7.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.056 4.056 3 H 0.086 0.914 4 C -0.072 4.072 5 N -0.204 5.204 6 C -0.126 4.126 7 C -0.006 4.006 8 C -0.269 4.269 9 C -0.115 4.115 10 C -0.221 4.221 11 C 0.110 3.890 12 C -0.510 4.510 13 H 0.095 0.905 14 C -0.180 4.180 15 N -0.462 5.462 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.183 1.183 20 C -0.252 4.252 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.043 0.957 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.840 0.887 -7.194 7.297 hybrid contribution -0.984 -0.287 0.945 1.394 sum -0.144 0.600 -6.249 6.280 Atomic orbital electron populations 1.21637 0.94193 1.00757 1.01752 1.20542 0.96037 0.97618 0.91373 0.91412 1.23438 0.89049 0.97555 0.97180 1.61071 1.35788 1.22573 1.00930 1.22536 1.00865 0.88770 1.00397 1.19597 0.94957 0.96255 0.89753 1.20004 1.07147 1.06666 0.93107 1.20707 0.97233 0.98548 0.95016 1.21248 0.98999 1.02589 0.99274 1.17303 0.90915 0.91296 0.89534 1.19652 1.14425 1.04634 1.12243 0.90536 1.26673 0.98537 0.96935 0.95878 1.69887 1.35761 1.18889 1.21700 0.85303 0.78272 0.79004 0.77764 1.18790 1.19518 1.18295 1.20794 1.03597 1.06241 0.94594 0.92733 0.90871 0.94999 0.92282 0.87254 0.95718 0.88642 0.91124 0.87341 0.86912 0.87974 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.75 71.98 0.63 -4.09 16 2 C -0.04 -1.49 3.56 -10.72 -0.04 -1.53 16 3 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 4 C 0.05 1.79 6.44 86.59 0.56 2.35 16 5 N -0.49 -18.44 5.35 -712.49 -3.81 -22.25 16 6 C 0.02 0.63 9.14 127.69 1.17 1.80 16 7 C 0.09 4.20 5.95 38.24 0.23 4.43 16 8 C -0.25 -11.35 9.53 22.68 0.22 -11.13 16 9 C -0.10 -4.66 9.99 22.15 0.22 -4.43 16 10 C -0.20 -10.92 8.67 22.76 0.20 -10.72 16 11 C 0.11 6.14 5.53 -21.36 -0.12 6.02 16 12 C -0.48 -25.58 7.46 23.46 0.17 -25.41 16 13 H 0.08 3.95 6.72 -2.91 -0.02 3.93 16 14 C 0.03 1.67 5.25 85.25 0.45 2.12 16 15 N -0.84 -44.40 10.89 21.82 0.24 -44.16 16 16 Si 0.98 38.70 29.57 68.60 2.03 40.73 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 18 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 C -0.25 -12.25 5.62 -19.05 -0.11 -12.36 16 21 H 0.05 2.24 5.82 -2.39 -0.01 2.22 16 22 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.87 7.62 -2.39 -0.02 1.85 16 25 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 26 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.07 7.30 -2.39 -0.02 2.05 16 29 H 0.11 4.36 7.35 -2.91 -0.02 4.34 16 30 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.10 5.79 6.29 -2.91 -0.02 5.77 16 32 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -60.27 259.25 3.13 -57.14 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 1.10 Total: 21.50 kcal Atomic # 6 Polarization: -56.53 SS G_CDS: 3.58 Total: -52.96 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -3.58 Total: -66.41 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -60.27 3.13 -57.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.657 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds