Wall clock time and date at job start Mon Mar 30 2020 03:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 110.66184 * 2 1 4 4 C 1.54608 * 110.90793 * 123.31779 * 2 1 3 5 5 N 1.47920 * 102.52459 * 143.81988 * 4 2 1 6 6 C 1.46901 * 110.99993 * 94.57932 * 5 4 2 7 7 C 1.40105 * 107.86022 * 332.77627 * 5 4 2 8 8 C 1.39874 * 129.77425 * 198.45839 * 7 5 4 9 9 C 1.38290 * 120.72936 * 180.28878 * 8 7 5 10 10 C 1.37680 * 120.54164 * 0.06160 * 9 8 7 11 11 C 1.40803 * 119.59420 * 359.87829 * 10 9 8 12 12 C 1.41407 * 120.20912 * 179.81544 * 11 10 9 13 13 H 1.08002 * 120.00012 * 140.63620 * 12 11 10 14 14 C 1.39932 * 120.00061 * 320.63073 * 12 11 10 15 15 N 1.30823 * 119.99907 * 169.38414 * 14 12 11 16 16 Si 1.86803 * 119.99790 * 349.38206 * 14 12 11 17 17 H 1.48497 * 109.47204 * 91.86429 * 16 14 12 18 18 H 1.48503 * 109.46864 * 211.86489 * 16 14 12 19 19 H 1.48502 * 109.46989 * 331.85983 * 16 14 12 20 20 C 1.38340 * 110.99737 * 18.45620 * 7 5 4 21 21 H 1.09005 * 109.46770 * 173.04988 * 1 2 3 22 22 H 1.08997 * 109.46998 * 293.04699 * 1 2 3 23 23 H 1.08996 * 109.47339 * 53.05177 * 1 2 3 24 24 H 1.09001 * 110.79736 * 25.56725 * 4 2 1 25 25 H 1.09003 * 110.79807 * 262.07985 * 4 2 1 26 26 H 1.09002 * 109.47052 * 299.92423 * 6 5 4 27 27 H 1.09000 * 109.47217 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47270 * 59.91969 * 6 5 4 29 29 H 1.08000 * 119.63659 * 0.27368 * 8 7 5 30 30 H 1.08000 * 119.73009 * 180.02562 * 9 8 7 31 31 H 1.08006 * 120.20621 * 179.90177 * 10 9 8 32 32 H 0.96999 * 119.99941 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0817 -0.7933 1.2069 5 7 3.2850 -1.4418 0.6415 6 6 4.4873 -0.6392 0.9026 7 6 3.0789 -1.6044 -0.7347 8 6 3.7290 -2.4456 -1.6437 9 6 3.3741 -2.4507 -2.9802 10 6 2.3733 -1.6253 -3.4415 11 6 1.7059 -0.7720 -2.5421 12 6 0.6787 0.0839 -3.0025 13 1 -0.2052 0.2386 -2.4015 14 6 0.8075 0.7305 -4.2367 15 7 -0.2179 1.3524 -4.7596 16 14 2.4437 0.7059 -5.1377 17 1 2.4802 -0.4525 -6.0662 18 1 2.6026 1.9644 -5.9099 19 1 3.5491 0.5864 -4.1533 20 6 2.0668 -0.7761 -1.1857 21 1 -0.3633 -1.0202 -0.1244 22 1 -0.3633 0.4023 0.9456 23 1 -0.3634 0.6177 -0.8212 24 1 1.3611 -1.5396 1.5416 25 1 2.3510 -0.1210 2.0215 26 1 4.3742 0.3440 0.4457 27 1 5.3574 -1.1389 0.4767 28 1 4.6225 -0.5265 1.9783 29 1 4.5170 -3.0982 -1.2979 30 1 3.8865 -3.1071 -3.6680 31 1 2.1015 -1.6326 -4.4868 32 1 -0.1286 1.8003 -5.6153 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:19 Heat of formation + Delta-G solvation = 29.782565 kcal Electronic energy + Delta-G solvation = -14758.642320 eV Core-core repulsion = 12490.755070 eV Total energy + Delta-G solvation = -2267.887251 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85362 -36.02717 -33.60712 -32.55779 -29.75251 -28.58496 -26.72324 -25.07529 -23.72818 -21.49151 -20.36369 -19.10746 -17.15752 -15.78162 -15.03560 -14.91668 -14.64131 -13.97714 -13.49808 -13.13270 -12.63896 -12.55427 -12.07260 -11.92227 -11.67057 -11.47577 -11.13970 -11.08102 -10.74324 -10.67614 -10.31603 -10.19711 -9.76061 -9.34946 -9.14922 -8.49733 -7.50878 -7.00442 -6.80603 -4.45628 2.49946 2.59691 3.14379 3.22491 3.33812 4.04041 4.36641 4.53755 5.24903 5.35593 5.51720 5.60973 5.71835 5.86356 6.00498 6.09738 6.11794 6.14797 6.33434 6.38984 6.45331 6.63439 6.74682 6.89253 6.91934 7.00957 7.21452 7.46267 7.56162 7.62107 7.74632 7.91206 8.25040 8.44826 8.65896 8.87394 10.21546 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.012701 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.446718 B = 2204.046214 C = 2733.881130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 H 0.067 0.933 4 C 0.051 3.949 5 N -0.499 5.499 6 C 0.031 3.969 7 C 0.103 3.897 8 C -0.214 4.214 9 C -0.076 4.076 10 C -0.232 4.232 11 C 0.120 3.880 12 C -0.460 4.460 13 H 0.101 0.899 14 C 0.085 3.915 15 N -0.825 5.825 16 Si 0.903 3.097 17 H -0.270 1.270 18 H -0.292 1.292 19 H -0.248 1.248 20 C -0.205 4.205 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -1.486 6.204 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.076 4.076 5 N -0.217 5.217 6 C -0.116 4.116 7 C 0.008 3.992 8 C -0.235 4.235 9 C -0.094 4.094 10 C -0.251 4.251 11 C 0.117 3.883 12 C -0.490 4.490 13 H 0.119 0.881 14 C -0.131 4.131 15 N -0.451 5.451 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.219 1.219 19 H -0.172 1.172 20 C -0.208 4.208 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.005 -1.801 6.326 8.265 hybrid contribution 0.550 0.773 -0.949 1.342 sum 5.556 -1.028 5.376 7.799 Atomic orbital electron populations 1.21788 0.94407 1.02163 1.00989 1.20856 0.96415 0.97997 0.92506 0.91511 1.23209 0.91481 0.96517 0.96389 1.60338 1.03695 1.46334 1.11348 1.22372 0.92747 0.95919 1.00523 1.19269 0.97052 0.95790 0.87097 1.19785 1.06062 1.05146 0.92490 1.20431 0.96670 0.97996 0.94342 1.21132 1.03039 1.01791 0.99151 1.17102 0.90784 0.90834 0.89583 1.19590 1.03980 1.23127 1.02285 0.88117 1.26011 0.97863 0.93314 0.95944 1.69642 1.30875 1.27465 1.17109 0.86409 0.83670 0.76989 0.79914 1.19571 1.21926 1.17153 1.20816 1.02756 1.02306 0.94950 0.93048 0.94194 0.90524 0.90108 0.91176 0.95247 0.91613 0.91864 0.88639 0.88243 0.87736 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.50 37.16 0.32 -2.24 16 2 C -0.06 -1.16 3.49 -90.52 -0.32 -1.47 16 3 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 4 C 0.05 0.88 6.55 -2.42 -0.02 0.86 16 5 N -0.50 -9.41 5.33 -176.85 -0.94 -10.36 16 6 C 0.03 0.49 9.29 60.07 0.56 1.05 16 7 C 0.10 2.25 5.58 -83.43 -0.47 1.78 16 8 C -0.21 -4.59 10.07 -38.95 -0.39 -4.98 16 9 C -0.08 -1.64 9.99 -39.77 -0.40 -2.04 16 10 C -0.23 -5.59 7.11 -38.82 -0.28 -5.86 16 11 C 0.12 3.04 4.90 -106.92 -0.52 2.52 16 12 C -0.46 -12.27 8.93 -37.74 -0.34 -12.61 16 13 H 0.10 2.76 5.24 -52.49 -0.28 2.49 16 14 C 0.08 2.24 5.46 -17.35 -0.09 2.14 16 15 N -0.82 -22.21 13.93 55.55 0.77 -21.44 16 16 Si 0.90 21.07 24.62 -169.99 -4.19 16.88 16 17 H -0.27 -6.10 6.77 56.52 0.38 -5.71 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.25 -5.97 6.88 56.52 0.39 -5.58 16 20 C -0.20 -4.77 5.61 -103.37 -0.58 -5.35 16 21 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.60 5.60 -51.93 -0.29 1.31 16 24 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 25 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.10 2.50 5.43 -52.48 -0.28 2.22 16 32 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 255.30 15.07 3.85 3.85 Total: -1.00 -27.77 255.30 -7.24 -35.02 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.21 Total: 2.26 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.53 Total: -26.21 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.17 Total: -31.80 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.19 Total: 16.88 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.77 -7.24 -35.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.801 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds