Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 110.66184 * 2 1 4 4 C 1.54608 * 110.90793 * 123.31779 * 2 1 3 5 5 N 1.47920 * 102.52459 * 143.81988 * 4 2 1 6 6 C 1.46901 * 110.99993 * 94.57932 * 5 4 2 7 7 C 1.40105 * 107.86022 * 332.77627 * 5 4 2 8 8 C 1.39874 * 129.77425 * 198.45839 * 7 5 4 9 9 C 1.38290 * 120.72936 * 180.28878 * 8 7 5 10 10 C 1.37680 * 120.54164 * 0.06160 * 9 8 7 11 11 C 1.40803 * 119.59420 * 359.87829 * 10 9 8 12 12 C 1.41407 * 120.20912 * 179.81544 * 11 10 9 13 13 H 1.08002 * 120.00012 * 140.63620 * 12 11 10 14 14 C 1.39932 * 120.00061 * 320.63073 * 12 11 10 15 15 N 1.30823 * 119.99907 * 169.38414 * 14 12 11 16 16 Si 1.86803 * 119.99790 * 349.38206 * 14 12 11 17 17 H 1.48497 * 109.47204 * 91.86429 * 16 14 12 18 18 H 1.48503 * 109.46864 * 211.86489 * 16 14 12 19 19 H 1.48502 * 109.46989 * 331.85983 * 16 14 12 20 20 C 1.38340 * 110.99737 * 18.45620 * 7 5 4 21 21 H 1.09005 * 109.46770 * 173.04988 * 1 2 3 22 22 H 1.08997 * 109.46998 * 293.04699 * 1 2 3 23 23 H 1.08996 * 109.47339 * 53.05177 * 1 2 3 24 24 H 1.09001 * 110.79736 * 25.56725 * 4 2 1 25 25 H 1.09003 * 110.79807 * 262.07985 * 4 2 1 26 26 H 1.09002 * 109.47052 * 299.92423 * 6 5 4 27 27 H 1.09000 * 109.47217 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47270 * 59.91969 * 6 5 4 29 29 H 1.08000 * 119.63659 * 0.27368 * 8 7 5 30 30 H 1.08000 * 119.73009 * 180.02562 * 9 8 7 31 31 H 1.08006 * 120.20621 * 179.90177 * 10 9 8 32 32 H 0.96999 * 119.99941 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0817 -0.7933 1.2069 5 7 3.2850 -1.4418 0.6415 6 6 4.4873 -0.6392 0.9026 7 6 3.0789 -1.6044 -0.7347 8 6 3.7290 -2.4456 -1.6437 9 6 3.3741 -2.4507 -2.9802 10 6 2.3733 -1.6253 -3.4415 11 6 1.7059 -0.7720 -2.5421 12 6 0.6787 0.0839 -3.0025 13 1 -0.2052 0.2386 -2.4015 14 6 0.8075 0.7305 -4.2367 15 7 -0.2179 1.3524 -4.7596 16 14 2.4437 0.7059 -5.1377 17 1 2.4802 -0.4525 -6.0662 18 1 2.6026 1.9644 -5.9099 19 1 3.5491 0.5864 -4.1533 20 6 2.0668 -0.7761 -1.1857 21 1 -0.3633 -1.0202 -0.1244 22 1 -0.3633 0.4023 0.9456 23 1 -0.3634 0.6177 -0.8212 24 1 1.3611 -1.5396 1.5416 25 1 2.3510 -0.1210 2.0215 26 1 4.3742 0.3440 0.4457 27 1 5.3574 -1.1389 0.4767 28 1 4.6225 -0.5265 1.9783 29 1 4.5170 -3.0982 -1.2979 30 1 3.8865 -3.1071 -3.6680 31 1 2.1015 -1.6326 -4.4868 32 1 -0.1286 1.8003 -5.6153 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287188.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = 12.821081 kcal Electronic energy + Delta-G solvation = -14759.377825 eV Core-core repulsion = 12490.755070 eV Total energy + Delta-G solvation = -2268.622756 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45621 -37.71968 -35.43062 -34.21018 -31.52074 -30.23615 -28.18365 -26.83643 -25.25448 -23.17714 -22.06929 -20.78492 -18.99316 -17.48660 -16.65926 -16.59710 -16.31202 -15.59334 -15.09336 -14.78028 -14.31145 -14.14876 -13.77594 -13.43579 -13.25874 -13.14588 -12.77934 -12.58175 -12.39663 -12.35510 -12.04668 -11.83579 -11.55749 -11.07548 -11.03653 -10.09470 -9.33925 -8.75940 -8.64545 -6.45215 0.73634 0.78822 1.26164 1.37248 1.46151 2.14604 2.63868 2.92755 3.39039 3.89262 4.10647 4.16137 4.36329 4.42363 4.53491 4.61544 4.65223 4.72492 4.76976 4.89446 4.93809 5.07734 5.09778 5.20914 5.24550 5.43286 5.50516 5.79439 5.83968 5.87080 6.06196 6.15415 6.40108 6.57687 6.78470 6.92566 8.31170 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.012701 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.446718 B = 2204.046214 C = 2733.881130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 H 0.062 0.938 4 C 0.059 3.941 5 N -0.502 5.502 6 C 0.029 3.971 7 C 0.098 3.902 8 C -0.207 4.207 9 C -0.077 4.077 10 C -0.249 4.249 11 C 0.096 3.904 12 C -0.485 4.485 13 H 0.077 0.923 14 C 0.047 3.953 15 N -0.867 5.867 16 Si 0.954 3.046 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.225 4.225 21 H 0.040 0.960 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.018 0.982 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -2.499 7.885 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.068 4.068 5 N -0.220 5.220 6 C -0.116 4.116 7 C 0.003 3.997 8 C -0.228 4.228 9 C -0.096 4.096 10 C -0.269 4.269 11 C 0.093 3.907 12 C -0.516 4.516 13 H 0.095 0.905 14 C -0.164 4.164 15 N -0.496 5.496 16 Si 0.779 3.221 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.229 4.229 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.124 0.876 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.117 0.883 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.186 -2.820 8.018 11.130 hybrid contribution -0.042 0.964 -1.290 1.611 sum 7.144 -1.856 6.728 9.987 Atomic orbital electron populations 1.21654 0.94146 1.01024 1.01579 1.20965 0.96722 0.97845 0.92694 0.91970 1.23293 0.90921 0.96752 0.95853 1.60394 1.05213 1.47268 1.09100 1.22497 0.91472 0.94825 1.02838 1.19625 0.96197 0.95065 0.88860 1.20228 1.05806 1.04435 0.92295 1.20807 0.95879 0.97569 0.95331 1.21256 1.04083 1.02626 0.98939 1.17308 0.91081 0.91169 0.91098 1.19619 1.04310 1.24845 1.02857 0.90503 1.26604 1.00272 0.93042 0.96526 1.69686 1.32313 1.29472 1.18109 0.85627 0.79975 0.77648 0.78832 1.18367 1.20943 1.18453 1.21285 1.03422 1.03075 0.95125 0.94116 0.90660 0.93646 0.89462 0.87620 0.96311 0.91091 0.88354 0.85827 0.84822 0.88262 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.50 71.98 0.61 -4.15 16 2 C -0.06 -2.43 3.49 -10.73 -0.04 -2.47 16 3 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 4 C 0.06 1.81 6.55 86.65 0.57 2.37 16 5 N -0.50 -17.12 5.33 -713.42 -3.80 -20.93 16 6 C 0.03 0.82 9.29 127.69 1.19 2.01 16 7 C 0.10 4.05 5.58 38.24 0.21 4.26 16 8 C -0.21 -8.23 10.07 22.68 0.23 -8.00 16 9 C -0.08 -3.18 9.99 22.15 0.22 -2.95 16 10 C -0.25 -11.92 7.11 22.77 0.16 -11.76 16 11 C 0.10 4.94 4.90 -21.35 -0.10 4.83 16 12 C -0.49 -27.07 8.93 23.46 0.21 -26.86 16 13 H 0.08 4.52 5.24 -2.91 -0.02 4.50 16 14 C 0.05 2.57 5.46 85.25 0.47 3.03 16 15 N -0.87 -48.68 13.93 21.82 0.30 -48.38 16 16 Si 0.95 44.13 24.62 68.60 1.69 45.82 16 17 H -0.26 -11.32 6.77 99.48 0.67 -10.64 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -12.39 6.88 99.48 0.68 -11.70 16 20 C -0.23 -10.38 5.61 -19.06 -0.11 -10.49 16 21 H 0.04 1.57 8.13 -2.38 -0.02 1.55 16 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.04 1.99 5.60 -2.39 -0.01 1.98 16 24 H 0.09 2.60 7.92 -2.39 -0.02 2.58 16 25 H 0.11 2.53 7.76 -2.39 -0.02 2.51 16 26 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 29 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 30 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.10 4.75 5.43 -2.91 -0.02 4.74 16 32 H 0.29 14.72 8.30 -92.71 -0.77 13.95 16 Total: -1.00 -61.02 255.30 2.86 -58.16 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.05 Total: 15.48 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 3.62 Total: -50.17 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -3.50 Total: -69.30 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.69 Total: 45.82 kcal Total: -61.02 2.86 -58.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287188.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.984 kcal (2) G-P(sol) polarization free energy of solvation -61.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds