Wall clock time and date at job start Mon Mar 30 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.82405 * 2 1 4 4 C 1.53423 * 109.78550 * 120.80175 * 2 1 3 5 5 C 1.52860 * 108.80099 * 182.89430 * 4 2 1 6 6 C 1.50649 * 110.43991 * 308.81428 * 5 4 2 7 7 C 1.36763 * 118.74470 * 200.64221 * 6 5 4 8 8 C 1.40704 * 120.12845 * 180.50160 * 7 6 5 9 9 C 1.41138 * 120.16879 * 179.72218 * 8 7 6 10 10 H 1.08004 * 120.00047 * 155.12208 * 9 8 7 11 11 C 1.39859 * 120.00292 * 334.85409 * 9 8 7 12 12 N 1.30912 * 119.99803 * 342.58170 * 11 9 8 13 13 Si 1.86798 * 120.00413 * 162.58647 * 11 9 8 14 14 H 1.48495 * 109.47441 * 89.99623 * 13 11 9 15 15 H 1.48500 * 109.47352 * 210.00171 * 13 11 9 16 16 H 1.48508 * 109.47033 * 329.99446 * 13 11 9 17 17 C 1.40905 * 119.66241 * 359.45589 * 8 7 6 18 18 C 1.36227 * 119.66855 * 0.15222 * 17 8 7 19 19 C 1.39326 * 121.45336 * 20.46908 * 6 5 4 20 20 N 1.39177 * 120.75043 * 359.60022 * 19 6 5 21 21 H 1.08999 * 109.47210 * 180.80657 * 1 2 3 22 22 H 1.08998 * 109.47478 * 300.81116 * 1 2 3 23 23 H 1.08997 * 109.47103 * 60.81339 * 1 2 3 24 24 H 1.08995 * 109.58724 * 302.69449 * 4 2 1 25 25 H 1.09002 * 109.58189 * 63.10386 * 4 2 1 26 26 H 1.09003 * 109.30618 * 69.10817 * 5 4 2 27 27 H 1.08996 * 109.30877 * 188.70774 * 5 4 2 28 28 H 1.07996 * 119.93648 * 0.23750 * 7 6 5 29 29 H 0.96997 * 120.00012 * 179.97438 * 12 11 9 30 30 H 1.07999 * 120.16787 * 180.13898 * 17 8 7 31 31 H 1.08003 * 119.81972 * 180.02562 * 18 17 8 32 32 H 0.97010 * 120.47982 * 193.64353 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0493 -0.7393 1.2400 5 6 3.5760 -0.6634 1.2554 6 6 4.1381 -1.1059 -0.0704 7 6 5.4418 -1.5150 -0.1284 8 6 5.9998 -1.9242 -1.3535 9 6 7.3468 -2.3410 -1.4155 10 1 7.6694 -3.0106 -2.1991 11 6 8.2651 -1.8825 -0.4655 12 7 7.9858 -0.8289 0.2596 13 14 9.8902 -2.7733 -0.2313 14 1 10.9110 -2.1871 -1.1366 15 1 10.3361 -2.6277 1.1777 16 1 9.7155 -4.2135 -0.5487 17 6 5.2052 -1.9212 -2.5172 18 6 3.9056 -1.5192 -2.4453 19 6 3.3594 -1.1088 -1.2257 20 7 2.0272 -0.7078 -1.1869 21 1 -0.3633 -1.0275 0.0145 22 1 -0.3634 0.5264 0.8826 23 1 -0.3633 0.5011 -0.8972 24 1 1.6511 -0.2692 2.1391 25 1 1.7359 -1.7825 1.2014 26 1 3.8838 0.3635 1.4527 27 1 3.9612 -1.3124 2.0418 28 1 6.0455 -1.5198 0.7671 29 1 8.6225 -0.5111 0.9187 30 1 5.6245 -2.2359 -3.4615 31 1 3.2943 -1.5163 -3.3357 32 1 1.4357 -0.8930 -1.9332 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:42 Heat of formation + Delta-G solvation = -10.269073 kcal Electronic energy + Delta-G solvation = -14291.860345 eV Core-core repulsion = 12022.236325 eV Total energy + Delta-G solvation = -2269.624020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48355 -37.66539 -35.19933 -33.89482 -32.31612 -30.13358 -29.05232 -26.10426 -24.46411 -22.91099 -22.57574 -20.29163 -18.80634 -17.69124 -17.04142 -16.52566 -15.71861 -15.23651 -14.93323 -14.52292 -14.41219 -13.82278 -13.71656 -13.46117 -13.15628 -12.88849 -12.72926 -12.55672 -12.34577 -12.26319 -11.90139 -11.63073 -11.32403 -11.08800 -10.99920 -10.17521 -9.18673 -8.54094 -8.11831 -6.01369 1.08831 1.17847 1.39243 1.51615 1.58725 2.27157 2.81925 2.97615 3.76670 4.03039 4.06215 4.19033 4.44176 4.53058 4.66256 4.67440 4.83500 4.94667 5.01211 5.09312 5.14424 5.19587 5.31029 5.35250 5.45031 5.55266 5.74609 5.82186 6.00836 6.21832 6.41490 6.69148 6.89365 7.08573 7.18591 7.39025 8.48657 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.052834 B = 0.007791 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.829854 B = 3593.231643 C = 4005.101581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.150 3.850 3 H 0.045 0.955 4 C -0.120 4.120 5 C -0.066 4.066 6 C -0.144 4.144 7 C -0.146 4.146 8 C 0.035 3.965 9 C -0.507 4.507 10 H 0.066 0.934 11 C 0.032 3.968 12 N -0.841 5.841 13 Si 0.977 3.023 14 H -0.264 1.264 15 H -0.268 1.268 16 H -0.262 1.262 17 C -0.202 4.202 18 C -0.165 4.165 19 C 0.108 3.892 20 N -0.753 5.753 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.282 0.718 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 1.297 2.451 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 H 0.063 0.937 4 C -0.158 4.158 5 C -0.103 4.103 6 C -0.148 4.148 7 C -0.167 4.167 8 C 0.033 3.967 9 C -0.538 4.538 10 H 0.085 0.915 11 C -0.180 4.180 12 N -0.470 5.470 13 Si 0.798 3.202 14 H -0.189 1.189 15 H -0.192 1.192 16 H -0.186 1.186 17 C -0.222 4.222 18 C -0.187 4.187 19 C 0.009 3.991 20 N -0.391 5.391 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -10.451 1.541 2.799 10.928 hybrid contribution 1.070 -0.375 -0.360 1.189 sum -9.381 1.166 2.439 9.763 Atomic orbital electron populations 1.21911 0.91842 1.02894 1.03520 1.21022 0.95291 0.94064 0.85123 0.93734 1.21888 0.93905 1.01051 0.98995 1.20261 0.96423 1.00029 0.93627 1.19257 0.94511 1.06466 0.94549 1.20841 0.93548 1.04636 0.97627 1.17816 0.93793 0.93518 0.91620 1.19573 0.94233 1.27424 1.12615 0.91530 1.26619 1.03545 0.93964 0.93870 1.69930 1.37717 1.19479 1.19832 0.85296 0.77014 0.79470 0.78400 1.18934 1.19230 1.18589 1.20757 0.95306 1.09236 0.96877 1.20227 0.95596 1.07126 0.95777 1.17325 0.86072 1.03074 0.92614 1.44208 1.07111 1.66873 1.20859 0.91950 0.89500 0.91544 0.88666 0.92245 0.92511 0.92280 0.88367 0.90805 0.88660 0.86600 0.76807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.40 71.98 0.68 -2.04 16 2 C 0.15 4.21 3.52 45.06 0.16 4.37 16 3 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -3.52 5.42 30.69 0.17 -3.35 16 5 C -0.07 -2.55 5.77 29.79 0.17 -2.38 16 6 C -0.14 -6.88 5.73 -19.96 -0.11 -7.00 16 7 C -0.15 -8.12 8.23 22.53 0.19 -7.93 16 8 C 0.04 2.03 5.57 -21.31 -0.12 1.91 16 9 C -0.51 -29.29 9.03 23.37 0.21 -29.08 16 10 H 0.07 3.73 7.90 -2.91 -0.02 3.71 16 11 C 0.03 1.71 5.14 85.22 0.44 2.15 16 12 N -0.84 -46.87 10.97 21.82 0.24 -46.63 16 13 Si 0.98 40.89 29.59 68.60 2.03 42.92 16 14 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 15 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 17 C -0.20 -10.50 9.75 22.45 0.22 -10.28 16 18 C -0.17 -7.56 9.80 22.18 0.22 -7.35 16 19 C 0.11 4.79 6.50 38.61 0.25 5.04 16 20 N -0.75 -25.50 5.56 -316.87 -1.76 -27.26 16 21 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 28 H 0.10 5.72 6.17 -2.91 -0.02 5.71 16 29 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 30 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 31 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.40 11.50 8.58 -92.70 -0.80 10.70 16 Total: -1.00 -64.22 263.45 3.28 -60.93 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.31 Total: 25.97 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 2.46 Total: -55.93 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.52 Total: -73.90 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -64.22 3.28 -60.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.664 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds