Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38269 * 120.06199 * 2 1 4 4 C 1.38034 * 119.82579 * 180.10055 * 3 2 1 5 5 C 1.38677 * 120.34903 * 0.03226 * 4 3 2 6 6 C 1.37839 * 119.84897 * 359.81962 * 5 4 3 7 7 C 1.38013 * 120.06770 * 180.02562 * 2 1 3 8 8 C 1.50625 * 121.84288 * 180.25777 * 6 5 4 9 9 N 1.46635 * 110.49786 * 342.41881 * 8 6 5 10 10 C 1.47165 * 110.25041 * 52.53279 * 9 8 6 11 11 H 1.08993 * 109.63366 * 48.63755 * 10 9 8 12 12 C 1.50696 * 109.62935 * 169.03984 * 10 9 8 13 13 H 1.07999 * 120.00319 * 119.99864 * 12 10 9 14 14 C 1.37885 * 119.99717 * 299.99247 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.50715 * 118.48824 * 179.55806 * 5 4 3 21 21 H 1.09004 * 109.47311 * 269.97718 * 1 2 3 22 22 H 1.09000 * 109.47103 * 29.98306 * 1 2 3 23 23 H 1.09001 * 109.46863 * 149.98073 * 1 2 3 24 24 H 1.07997 * 120.08721 * 0.12142 * 3 2 1 25 25 H 1.08000 * 119.82264 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.80999 * 359.94967 * 7 2 1 27 27 H 1.09005 * 109.27106 * 222.15618 * 8 6 5 28 28 H 1.09000 * 109.24346 * 102.66967 * 8 6 5 29 29 H 1.00896 * 111.00016 * 289.10674 * 9 8 6 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.38447 * 43.15185 * 20 5 4 32 32 H 1.09005 * 109.39105 * 283.44958 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 6 3.5800 1.1910 -0.0021 5 6 4.2757 -0.0086 -0.0049 6 6 3.5857 -1.2019 -0.0018 7 6 2.1985 -1.1944 -0.0005 8 6 4.2957 -2.5303 0.0011 9 7 5.6923 -2.3671 -0.4146 10 6 6.3462 -1.3261 0.3944 11 1 6.1464 -1.5040 1.4510 12 6 7.8328 -1.3531 0.1485 13 1 8.3308 -0.4800 -0.2464 14 6 8.5571 -2.4927 0.4278 15 7 9.8545 -2.5162 0.2137 16 14 7.6955 -4.0031 1.1103 17 1 7.6906 -3.9421 2.5941 18 1 6.2972 -4.0429 0.6119 19 1 8.4139 -5.2250 0.6675 20 6 5.7822 0.0341 -0.0173 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5141 24 1 1.6621 2.1334 0.0020 25 1 4.1209 2.1258 -0.0017 26 1 1.6565 -2.1285 -0.0001 27 1 3.7922 -3.2088 -0.6877 28 1 4.2662 -2.9511 1.0062 29 1 5.7540 -2.1524 -1.3985 30 1 10.3640 -3.3177 0.4106 31 1 6.1283 0.7959 0.6812 32 1 6.1290 0.2810 -1.0208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261299294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = 19.947355 kcal Electronic energy + Delta-G solvation = -14318.990718 eV Core-core repulsion = 12050.676980 eV Total energy + Delta-G solvation = -2268.313737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73720 -36.49988 -32.66267 -32.55964 -31.03214 -29.24020 -27.12479 -24.38418 -23.66822 -21.87159 -20.78942 -19.06841 -16.99508 -15.53657 -15.27363 -14.77855 -14.31143 -13.90208 -13.84064 -13.69009 -12.80378 -12.75535 -12.67581 -12.42491 -12.16897 -11.53465 -11.09738 -11.03411 -10.88793 -10.76625 -10.38529 -9.90974 -9.69536 -9.06973 -8.49602 -8.44398 -8.04661 -7.11606 -5.97955 -4.06833 1.63584 1.64649 3.52479 3.61944 3.91163 3.98614 4.72474 4.98093 5.00125 5.12770 5.24531 5.33682 5.40251 5.57354 5.59849 5.73387 5.77780 5.85489 5.93146 6.13129 6.19020 6.27896 6.38212 6.39561 6.68179 6.73177 6.79400 7.01093 7.13426 7.32858 7.69369 8.14923 8.24088 8.64266 9.01332 9.67863 11.12084 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.053461 B = 0.008265 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.618515 B = 3386.822791 C = 3803.051473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.128 4.128 4 C -0.121 4.121 5 C -0.071 4.071 6 C -0.108 4.108 7 C -0.119 4.119 8 C 0.088 3.912 9 N -0.667 5.667 10 C 0.185 3.815 11 H 0.038 0.962 12 C -0.523 4.523 13 H 0.070 0.930 14 C 0.085 3.915 15 N -0.902 5.902 16 Si 0.867 3.133 17 H -0.298 1.298 18 H -0.195 1.195 19 H -0.303 1.303 20 C -0.102 4.102 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.331 0.669 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 3.660 -0.608 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.071 4.071 6 C -0.110 4.110 7 C -0.138 4.138 8 C -0.043 4.043 9 N -0.296 5.296 10 C 0.077 3.923 11 H 0.056 0.944 12 C -0.561 4.561 13 H 0.088 0.912 14 C -0.119 4.119 15 N -0.539 5.539 16 Si 0.694 3.306 17 H -0.225 1.225 18 H -0.117 1.117 19 H -0.230 1.230 20 C -0.140 4.140 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.302 3.014 -0.230 16.580 hybrid contribution -0.610 0.176 0.039 0.636 sum -16.912 3.190 -0.191 17.212 Atomic orbital electron populations 1.20719 0.91750 1.02218 1.01822 1.19754 0.95557 0.93389 1.01685 1.20866 0.94171 0.97089 1.02438 1.21129 0.94002 0.97699 1.01070 1.20040 0.97071 0.92143 0.97842 1.20780 0.93785 0.97223 0.99221 1.20944 0.93655 0.97186 1.01975 1.20990 0.90270 0.91550 1.01467 1.62091 1.09658 1.49328 1.08547 1.19586 0.94670 0.84416 0.93581 0.94426 1.20849 0.88908 1.00744 1.45564 0.91185 1.24991 0.94284 0.99123 0.93518 1.69965 1.06878 1.29160 1.47852 0.87181 0.85006 0.80869 0.77567 1.22516 1.11690 1.23048 1.21198 0.88557 1.02148 1.02129 0.91672 0.92008 0.91923 0.86782 0.86474 0.86636 0.91088 0.90679 0.85108 0.92853 0.91168 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.02 36.01 0.36 -0.73 16 2 C -0.10 -1.41 5.87 -104.69 -0.62 -2.03 16 3 C -0.13 -1.77 9.71 -39.64 -0.38 -2.16 16 4 C -0.12 -1.89 9.66 -39.49 -0.38 -2.27 16 5 C -0.07 -1.26 5.77 -104.60 -0.60 -1.86 16 6 C -0.11 -1.85 5.79 -104.62 -0.61 -2.46 16 7 C -0.12 -1.76 9.31 -39.48 -0.37 -2.13 16 8 C 0.09 1.55 5.84 -5.16 -0.03 1.52 16 9 N -0.67 -13.98 3.45 -109.33 -0.38 -14.36 16 10 C 0.18 4.24 1.79 -68.77 -0.12 4.11 16 11 H 0.04 0.91 7.50 -51.93 -0.39 0.52 16 12 C -0.52 -14.49 9.33 -34.44 -0.32 -14.81 16 13 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 14 C 0.08 2.45 5.47 -17.82 -0.10 2.36 16 15 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 16 Si 0.87 21.69 26.96 -169.99 -4.58 17.10 16 17 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 18 H -0.20 -4.48 4.71 56.52 0.27 -4.22 16 19 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 20 C -0.10 -2.02 5.08 -27.93 -0.14 -2.16 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 23 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 24 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 27 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 28 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 29 H 0.33 6.76 8.74 -39.29 -0.34 6.42 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.47 8.11 -51.93 -0.42 1.05 16 LS Contribution 260.43 15.07 3.92 3.92 Total: -1.00 -30.50 260.43 -8.21 -38.71 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.64 Total: 4.36 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -3.31 Total: -22.62 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.40 Total: -41.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.58 Total: 17.10 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.50 -8.21 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.659 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds