Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38269 * 120.06199 * 2 1 4 4 C 1.38034 * 119.82579 * 180.10055 * 3 2 1 5 5 C 1.38677 * 120.34903 * 0.03226 * 4 3 2 6 6 C 1.37839 * 119.84897 * 359.81962 * 5 4 3 7 7 C 1.38013 * 120.06770 * 180.02562 * 2 1 3 8 8 C 1.50625 * 121.84288 * 180.25777 * 6 5 4 9 9 N 1.46635 * 110.49786 * 342.41881 * 8 6 5 10 10 C 1.47165 * 110.25041 * 52.53279 * 9 8 6 11 11 H 1.08993 * 109.63366 * 48.63755 * 10 9 8 12 12 C 1.50696 * 109.62935 * 169.03984 * 10 9 8 13 13 H 1.07999 * 120.00319 * 119.99864 * 12 10 9 14 14 C 1.37885 * 119.99717 * 299.99247 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.50715 * 118.48824 * 179.55806 * 5 4 3 21 21 H 1.09004 * 109.47311 * 269.97718 * 1 2 3 22 22 H 1.09000 * 109.47103 * 29.98306 * 1 2 3 23 23 H 1.09001 * 109.46863 * 149.98073 * 1 2 3 24 24 H 1.07997 * 120.08721 * 0.12142 * 3 2 1 25 25 H 1.08000 * 119.82264 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.80999 * 359.94967 * 7 2 1 27 27 H 1.09005 * 109.27106 * 222.15618 * 8 6 5 28 28 H 1.09000 * 109.24346 * 102.66967 * 8 6 5 29 29 H 1.00896 * 111.00016 * 289.10674 * 9 8 6 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.38447 * 43.15185 * 20 5 4 32 32 H 1.09005 * 109.39105 * 283.44958 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1967 0.0000 4 6 3.5800 1.1910 -0.0021 5 6 4.2757 -0.0086 -0.0049 6 6 3.5857 -1.2019 -0.0018 7 6 2.1985 -1.1944 -0.0005 8 6 4.2957 -2.5303 0.0011 9 7 5.6923 -2.3671 -0.4146 10 6 6.3462 -1.3261 0.3944 11 1 6.1464 -1.5040 1.4510 12 6 7.8328 -1.3531 0.1485 13 1 8.3308 -0.4800 -0.2464 14 6 8.5571 -2.4927 0.4278 15 7 9.8545 -2.5162 0.2137 16 14 7.6955 -4.0031 1.1103 17 1 7.6906 -3.9421 2.5941 18 1 6.2972 -4.0429 0.6119 19 1 8.4139 -5.2250 0.6675 20 6 5.7822 0.0341 -0.0173 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5141 24 1 1.6621 2.1334 0.0020 25 1 4.1209 2.1258 -0.0017 26 1 1.6565 -2.1285 -0.0001 27 1 3.7922 -3.2088 -0.6877 28 1 4.2662 -2.9511 1.0062 29 1 5.7540 -2.1524 -1.3985 30 1 10.3640 -3.3177 0.4106 31 1 6.1283 0.7959 0.6812 32 1 6.1290 0.2810 -1.0208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261299294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 1.163148 kcal Electronic energy + Delta-G solvation = -14319.805262 eV Core-core repulsion = 12050.676980 eV Total energy + Delta-G solvation = -2269.128282 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01855 -37.95752 -34.61112 -33.84424 -32.56782 -30.59260 -28.58044 -26.00504 -25.04497 -23.10857 -22.38521 -20.50750 -19.02208 -16.92317 -16.58039 -16.19415 -16.01711 -15.49002 -15.29619 -14.77177 -14.63771 -14.11006 -13.92820 -13.69807 -13.34736 -12.97824 -12.83671 -12.41737 -12.33528 -12.09715 -11.99349 -11.77637 -11.48193 -11.09840 -10.70077 -9.60602 -9.25796 -8.79634 -8.23134 -6.35561 0.46013 0.49557 1.50532 1.56714 1.91570 2.61538 2.82139 3.12019 3.76039 3.91221 3.97263 4.06010 4.17242 4.35459 4.42522 4.53857 4.64221 4.69585 4.80021 4.88454 4.89521 4.97273 5.07948 5.20895 5.27514 5.36251 5.51937 5.66083 5.71964 5.82529 6.17209 6.18611 6.36992 6.79200 6.80652 7.42979 8.90355 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.053461 B = 0.008265 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.618515 B = 3386.822791 C = 3803.051473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.099 4.099 6 C -0.122 4.122 7 C -0.122 4.122 8 C 0.089 3.911 9 N -0.678 5.678 10 C 0.193 3.807 11 H 0.029 0.971 12 C -0.524 4.524 13 H 0.030 0.970 14 C 0.026 3.974 15 N -0.953 5.953 16 Si 0.929 3.071 17 H -0.302 1.302 18 H -0.159 1.159 19 H -0.312 1.312 20 C -0.091 4.091 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.143 0.857 25 H 0.125 0.875 26 H 0.140 0.860 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.334 0.666 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.709 3.296 -0.479 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.147 4.147 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.140 4.140 8 C -0.041 4.041 9 N -0.307 5.307 10 C 0.085 3.915 11 H 0.047 0.953 12 C -0.562 4.562 13 H 0.048 0.952 14 C -0.172 4.172 15 N -0.592 5.592 16 Si 0.755 3.245 17 H -0.230 1.230 18 H -0.080 1.080 19 H -0.240 1.240 20 C -0.130 4.130 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.161 0.839 25 H 0.143 0.857 26 H 0.158 0.842 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.152 0.848 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.340 2.669 -0.109 20.515 hybrid contribution 0.579 0.421 -0.030 0.717 sum -19.761 3.090 -0.139 20.001 Atomic orbital electron populations 1.20792 0.88884 1.03653 1.03025 1.20230 0.97644 0.92721 0.99320 1.21229 0.93424 0.98731 1.01105 1.21281 0.95149 0.97251 1.01010 1.19875 0.95344 0.93743 1.00912 1.20736 0.95000 0.96250 1.00445 1.21198 0.92620 0.98889 1.01305 1.21060 0.88236 0.92751 1.02061 1.61746 1.12301 1.48201 1.08411 1.19268 0.91908 0.86980 0.93372 0.95267 1.21154 0.91837 0.99092 1.44086 0.95214 1.25905 0.94739 1.02486 0.94084 1.70109 1.08718 1.30092 1.50306 0.86275 0.85570 0.76405 0.76276 1.23050 1.07959 1.23978 1.20934 0.90914 1.00052 1.01118 0.90421 0.90526 0.90683 0.83938 0.85682 0.84240 0.88361 0.90692 0.84848 0.92948 0.91855 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.02 71.24 0.71 -0.90 16 2 C -0.10 -2.27 5.87 -19.91 -0.12 -2.39 16 3 C -0.13 -3.07 9.71 22.23 0.22 -2.86 16 4 C -0.13 -3.78 9.66 22.33 0.22 -3.57 16 5 C -0.10 -3.40 5.77 -19.85 -0.11 -3.51 16 6 C -0.12 -3.89 5.79 -19.87 -0.12 -4.00 16 7 C -0.12 -3.12 9.31 22.33 0.21 -2.91 16 8 C 0.09 2.88 5.84 85.58 0.50 3.39 16 9 N -0.68 -27.53 3.45 -499.81 -1.72 -29.26 16 10 C 0.19 8.92 1.79 44.08 0.08 9.00 16 11 H 0.03 1.41 7.50 -2.39 -0.02 1.39 16 12 C -0.52 -30.13 9.33 25.60 0.24 -29.90 16 13 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 14 C 0.03 1.56 5.47 84.66 0.46 2.02 16 15 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 16 Si 0.93 45.34 26.96 68.60 1.85 47.19 16 17 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 18 H -0.16 -6.80 4.71 99.48 0.47 -6.33 16 19 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 20 C -0.09 -3.69 5.08 29.82 0.15 -3.54 16 21 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 23 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 24 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 25 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 26 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.10 2.67 8.13 -2.38 -0.02 2.65 16 28 H 0.07 2.46 8.09 -2.39 -0.02 2.44 16 29 H 0.33 13.36 8.74 -89.70 -0.78 12.58 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.06 2.53 8.11 -2.38 -0.02 2.51 16 Total: -1.00 -67.78 260.43 2.94 -64.84 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.08 Total: 17.38 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 2.44 Total: -39.17 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -1.43 Total: -90.24 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.85 Total: 47.19 kcal Total: -67.78 2.94 -64.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.004 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds