Wall clock time and date at job start Mon Mar 30 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39903 * 109.46929 * 2 1 4 4 C 1.50700 * 109.46982 * 119.99967 * 2 1 3 5 5 H 1.08000 * 119.99727 * 119.99643 * 4 2 1 6 6 C 1.37870 * 119.99833 * 299.99916 * 4 2 1 7 7 N 1.31521 * 120.00033 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00503 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47168 * 89.99960 * 8 6 4 10 10 H 1.48499 * 109.47433 * 209.99768 * 8 6 4 11 11 H 1.48499 * 109.47180 * 330.00210 * 8 6 4 12 12 C 1.52997 * 109.47168 * 240.00213 * 2 1 3 13 13 N 1.46894 * 109.47435 * 185.27820 * 12 2 1 14 14 C 1.47017 * 110.99966 * 286.62831 * 13 12 2 15 15 C 1.53095 * 109.26160 * 177.60486 * 14 13 12 16 16 O 1.43017 * 109.25639 * 56.84839 * 15 14 13 17 17 C 1.43016 * 113.73848 * 301.33094 * 16 15 14 18 18 C 1.47015 * 111.00342 * 162.99197 * 13 12 2 19 19 H 1.09001 * 109.47226 * 65.19597 * 1 2 3 20 20 H 1.09004 * 109.47253 * 305.20433 * 1 2 3 21 21 H 1.08996 * 109.47117 * 185.19883 * 1 2 3 22 22 H 0.96995 * 120.00239 * 180.02562 * 7 6 4 23 23 H 1.09001 * 109.46912 * 305.27966 * 12 2 1 24 24 H 1.09001 * 109.47489 * 65.27293 * 12 2 1 25 25 H 1.09003 * 109.50389 * 297.54076 * 14 13 12 26 26 H 1.09006 * 109.50728 * 57.66852 * 14 13 12 27 27 H 1.09006 * 109.50638 * 296.91554 * 15 14 13 28 28 H 1.08998 * 109.54686 * 176.80567 * 15 14 13 29 29 H 1.08999 * 109.50732 * 298.73528 * 17 16 15 30 30 H 1.09002 * 109.54330 * 178.62834 * 17 16 15 31 31 H 1.08998 * 109.50599 * 302.32929 * 18 13 12 32 32 H 1.09001 * 109.50272 * 62.45684 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1774 1.4923 12 6 2.0400 -0.7212 -1.2492 13 7 3.5034 -0.8325 -1.1873 14 6 4.1419 0.4677 -1.4389 15 6 5.6598 0.3191 -1.3061 16 8 6.1156 -0.6917 -2.2094 17 6 5.5147 -1.9712 -1.9924 18 6 3.9952 -1.8458 -2.1321 19 1 -0.3634 0.4311 -0.9329 20 1 -0.3634 0.5925 0.8397 21 1 -0.3633 -1.0234 0.0931 22 1 1.9034 -0.5278 4.4375 23 1 1.6015 -1.7179 -1.2978 24 1 1.7559 -0.1557 -2.1367 25 1 3.8958 0.8051 -2.4457 26 1 3.7825 1.1963 -0.7121 27 1 5.9095 0.0335 -0.2842 28 1 6.1414 1.2667 -1.5472 29 1 5.7602 -2.3234 -0.9905 30 1 5.8907 -2.6804 -2.7298 31 1 3.5289 -2.8060 -1.9114 32 1 3.7469 -1.5453 -3.1500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261311863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:30 Heat of formation + Delta-G solvation = -97.098623 kcal Electronic energy + Delta-G solvation = -15891.841826 eV Core-core repulsion = 13187.683370 eV Total energy + Delta-G solvation = -2704.158457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.26110 -40.33646 -37.05211 -35.13132 -33.14430 -32.05385 -29.03739 -27.21388 -25.41949 -24.88402 -21.54062 -21.29905 -19.00311 -17.59832 -17.28331 -16.91520 -16.39943 -16.05827 -15.87105 -15.51329 -15.09695 -14.85859 -14.56675 -14.29508 -13.96169 -13.45372 -12.98713 -12.71052 -12.62956 -12.31882 -12.23765 -12.21201 -11.85562 -11.49033 -10.92707 -10.90455 -10.73828 -10.39337 -9.09041 -8.29592 -6.38715 1.29229 1.40327 1.52832 2.34364 2.82551 3.01148 3.10434 3.90050 4.02789 4.08336 4.13680 4.23840 4.26995 4.39344 4.44948 4.57749 4.68080 4.69996 4.73764 4.78273 4.89353 4.99703 5.06126 5.17215 5.45523 5.66525 6.10712 6.14292 6.26068 6.35732 6.77166 7.32623 8.85651 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.040085 B = 0.010432 C = 0.010006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.351940 B = 2683.511846 C = 2797.628897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.195 3.805 3 F -0.240 7.240 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.025 3.975 7 N -0.939 5.939 8 Si 0.928 3.072 9 H -0.270 1.270 10 H -0.309 1.309 11 H -0.233 1.233 12 C 0.064 3.936 13 N -0.541 5.541 14 C 0.012 3.988 15 C 0.068 3.932 16 O -0.400 6.400 17 C 0.064 3.936 18 C 0.019 3.981 19 H 0.074 0.926 20 H 0.038 0.962 21 H 0.079 0.921 22 H 0.264 0.736 23 H 0.089 0.911 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.116 0.884 29 H 0.046 0.954 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 0.788 -12.144 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.176 3.824 3 F -0.221 7.221 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.174 4.174 7 N -0.579 5.579 8 Si 0.756 3.244 9 H -0.197 1.197 10 H -0.237 1.237 11 H -0.156 1.156 12 C -0.064 4.064 13 N -0.265 5.265 14 C -0.116 4.116 15 C -0.009 4.009 16 O -0.318 6.318 17 C -0.013 4.013 18 C -0.109 4.109 19 H 0.093 0.907 20 H 0.057 0.943 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.553 0.694 -11.656 11.779 hybrid contribution -0.836 0.774 0.294 1.177 sum 0.717 1.468 -11.362 11.479 Atomic orbital electron populations 1.22510 0.95506 1.03291 1.01247 1.19152 0.91923 0.75463 0.95858 1.92608 1.90285 1.41637 1.97582 1.21279 1.31325 1.13068 0.89215 0.92523 1.25739 0.96701 0.99171 0.95753 1.70038 1.46999 1.42315 0.98500 0.86389 0.78941 0.81671 0.77448 1.19658 1.23719 1.15610 1.22382 0.87645 1.01158 0.95203 1.61970 1.05894 1.07421 1.51254 1.23013 0.95828 0.92470 1.00294 1.22680 0.92764 0.92303 0.93118 1.87880 1.66484 1.19955 1.57517 1.22777 0.91161 0.85286 1.02080 1.22840 0.97083 0.96862 0.94104 0.90702 0.94295 0.90158 0.92707 0.89227 0.94023 0.94435 0.89340 0.93851 0.86562 0.93549 0.85714 0.89115 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.55 8.36 71.98 0.60 -5.95 16 2 C 0.19 8.72 0.92 -11.54 -0.01 8.71 16 3 F -0.24 -11.29 11.12 44.97 0.50 -10.79 16 4 C -0.51 -28.16 8.47 25.60 0.22 -27.94 16 5 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 6 C 0.02 1.43 5.45 84.65 0.46 1.90 16 7 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 8 Si 0.93 45.26 23.93 68.60 1.64 46.90 16 9 H -0.27 -12.38 6.92 99.48 0.69 -11.69 16 10 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 11 H -0.23 -10.90 5.48 99.48 0.54 -10.36 16 12 C 0.06 2.41 4.32 86.30 0.37 2.78 16 13 N -0.54 -20.47 3.92 -895.22 -3.51 -23.98 16 14 C 0.01 0.43 5.33 86.31 0.46 0.89 16 15 C 0.07 2.20 7.01 72.01 0.50 2.70 16 16 O -0.40 -12.60 10.83 -148.98 -1.61 -14.21 16 17 C 0.06 1.79 7.01 72.01 0.50 2.29 16 18 C 0.02 0.57 5.61 86.31 0.48 1.05 16 19 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 20 H 0.04 1.62 3.42 -2.38 -0.01 1.61 16 21 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 22 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 23 H 0.09 3.13 7.91 -2.39 -0.02 3.11 16 24 H 0.04 1.39 8.03 -2.39 -0.02 1.37 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 3.61 5.43 -2.38 -0.01 3.60 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.09 2.52 8.03 -2.39 -0.02 2.50 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -65.58 249.76 1.83 -63.75 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.91 Total: 10.01 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.60 Total: -13.56 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.21 Total: -82.10 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.61 Total: -14.21 kcal Atomic # 9 Polarization: -11.29 SS G_CDS: 0.50 Total: -10.79 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.64 Total: 46.90 kcal Total: -65.58 1.83 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261311863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.348 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds