Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00302 * 2 1 4 4 H 1.48499 * 109.47260 * 269.99788 * 3 2 1 5 5 H 1.48505 * 109.47100 * 30.00031 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99508 * 3 2 1 7 7 C 1.37870 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00264 * 187.79003 * 7 2 1 9 9 C 1.50699 * 120.00486 * 7.79282 * 7 2 1 10 10 H 1.09001 * 109.46933 * 5.09974 * 9 7 2 11 11 C 1.50698 * 109.47740 * 125.09807 * 9 7 2 12 12 C 1.38232 * 119.99681 * 79.72698 * 11 9 7 13 13 C 1.38241 * 119.99855 * 179.76897 * 12 11 9 14 14 C 1.38238 * 119.99711 * 0.50954 * 13 12 11 15 15 C 1.38234 * 119.99952 * 359.74660 * 14 13 12 16 16 C 1.38230 * 120.00218 * 260.00407 * 11 9 7 17 17 N 1.46904 * 109.47244 * 245.10188 * 9 7 2 18 18 C 1.47475 * 110.99881 * 325.80732 * 17 9 7 19 19 C 1.53516 * 87.93337 * 138.70389 * 18 17 9 20 20 C 1.47481 * 110.99798 * 61.78118 * 17 9 7 21 21 H 0.96993 * 120.00434 * 183.09675 * 1 2 3 22 22 H 1.08001 * 120.00336 * 359.97438 * 12 11 9 23 23 H 1.08000 * 119.99806 * 180.23209 * 13 12 11 24 24 H 1.07995 * 119.99320 * 179.72233 * 14 13 12 25 25 H 1.08000 * 119.99210 * 179.97438 * 15 14 13 26 26 H 1.07997 * 120.00080 * 0.02562 * 16 11 9 27 27 H 1.08996 * 113.47398 * 253.46984 * 18 17 9 28 28 H 1.08998 * 113.47893 * 23.93973 * 18 17 9 29 29 H 1.08994 * 114.17191 * 220.33348 * 19 18 17 30 30 H 1.08991 * 114.34223 * 87.63344 * 19 18 17 31 31 H 1.09001 * 113.47934 * 336.05722 * 20 17 9 32 32 H 1.08996 * 113.48086 * 106.47422 * 20 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0769 -1.1984 0.1273 9 6 1.2614 -2.4932 -0.1758 10 1 0.2106 -2.2861 -0.3785 11 6 1.8543 -3.2584 -1.3308 12 6 3.0189 -3.9821 -1.1551 13 6 3.5602 -4.6880 -2.2134 14 6 2.9427 -4.6614 -3.4498 15 6 1.7810 -3.9334 -3.6268 16 6 1.2368 -3.2319 -2.5672 17 7 1.3750 -3.2928 1.0512 18 6 2.6859 -3.0889 1.6954 19 6 1.9559 -3.0612 3.0456 20 6 0.7656 -2.5922 2.1970 21 1 -0.4850 -0.8387 0.0454 22 1 3.5040 -3.9989 -0.1904 23 1 4.4681 -5.2564 -2.0751 24 1 3.3681 -5.2092 -4.2776 25 1 1.2989 -3.9124 -4.5929 26 1 0.3296 -2.6625 -2.7057 27 1 3.3610 -3.9374 1.5841 28 1 3.1545 -2.1397 1.4356 29 1 2.3316 -2.3106 3.7408 30 1 1.8194 -4.0412 3.5026 31 1 0.7217 -1.5103 2.0711 32 1 -0.1871 -3.0190 2.5102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306151431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = 49.545574 kcal Electronic energy + Delta-G solvation = -14703.301489 eV Core-core repulsion = 12436.271227 eV Total energy + Delta-G solvation = -2267.030262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22083 -39.40691 -35.43548 -32.94465 -31.68203 -29.55124 -27.25154 -26.47533 -24.63689 -23.15963 -21.84741 -20.77686 -18.72156 -17.55037 -16.97966 -16.42596 -16.13411 -15.75596 -15.30715 -15.03641 -14.52487 -14.18790 -13.87350 -13.42149 -12.86784 -12.75588 -12.57030 -12.30933 -12.10831 -11.99033 -11.51736 -11.45479 -11.16403 -11.05798 -10.64365 -9.71810 -9.61687 -9.15225 -8.63232 -6.40160 0.61042 0.68100 1.49828 1.55556 1.73220 2.49210 2.96923 3.19370 3.55726 3.76096 4.06752 4.20118 4.25240 4.31037 4.44398 4.60036 4.70035 4.77600 4.80702 4.92426 5.00134 5.02484 5.06855 5.23031 5.36380 5.46562 5.56150 5.68382 5.79335 5.80551 5.99170 6.17929 6.27162 6.46326 6.55593 7.37738 8.67720 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.012858 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.053814 B = 2177.130462 C = 2850.271755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 1.106 2.894 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.604 4.604 8 H 0.054 0.946 9 C 0.182 3.818 10 H 0.025 0.975 11 C -0.048 4.048 12 C -0.135 4.135 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.154 4.154 17 N -0.491 5.491 18 C -0.001 4.001 19 C -0.129 4.129 20 C 0.002 3.998 21 H 0.259 0.741 22 H 0.119 0.881 23 H 0.144 0.856 24 H 0.151 0.849 25 H 0.139 0.861 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -6.525 -0.907 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.929 3.071 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.643 4.643 8 H 0.072 0.928 9 C 0.075 3.925 10 H 0.043 0.957 11 C -0.049 4.049 12 C -0.153 4.153 13 C -0.141 4.141 14 C -0.160 4.160 15 C -0.139 4.139 16 C -0.172 4.172 17 N -0.213 5.213 18 C -0.130 4.130 19 C -0.167 4.167 20 C -0.127 4.127 21 H 0.071 0.929 22 H 0.137 0.863 23 H 0.162 0.838 24 H 0.168 0.832 25 H 0.157 0.843 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.971 -5.572 -1.176 8.251 hybrid contribution -0.194 -0.497 0.040 0.534 sum 5.777 -6.069 -1.136 8.456 Atomic orbital electron populations 1.70933 1.07831 1.30173 1.47340 1.27074 0.96381 1.05825 0.91983 0.83060 0.74542 0.71967 0.77511 1.20546 1.21009 1.19307 1.22284 0.95180 0.92647 1.54182 0.92806 1.18877 0.95331 0.90406 0.87919 0.95659 1.20269 0.95239 0.94044 0.95337 1.21255 0.95972 0.98244 0.99857 1.21439 1.00431 0.99234 0.92954 1.21342 0.96017 1.00699 0.97968 1.21300 0.96956 0.97250 0.98387 1.21036 1.00681 1.01457 0.94074 1.69168 1.08102 1.42306 1.01737 1.23838 0.93805 1.01585 0.93767 1.23022 0.95902 1.01930 0.95804 1.23463 0.97984 0.98359 0.92942 0.92927 0.86305 0.83787 0.83165 0.84299 0.88861 0.90790 0.90334 0.90430 0.88418 0.92649 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 13.39 21.45 0.29 -53.92 16 2 C -0.01 -0.63 4.85 84.65 0.41 -0.22 16 3 Si 1.11 48.86 29.91 68.60 2.05 50.92 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.60 -32.03 5.68 25.60 0.15 -31.89 16 8 H 0.05 2.87 6.29 -2.91 -0.02 2.86 16 9 C 0.18 9.22 2.36 43.42 0.10 9.32 16 10 H 0.03 1.45 5.70 -2.39 -0.01 1.44 16 11 C -0.05 -2.22 4.94 -19.87 -0.10 -2.32 16 12 C -0.14 -5.45 9.23 22.27 0.21 -5.25 16 13 C -0.12 -4.02 10.05 22.27 0.22 -3.79 16 14 C -0.14 -4.34 10.05 22.27 0.22 -4.11 16 15 C -0.12 -4.18 10.05 22.27 0.22 -3.95 16 16 C -0.15 -6.66 9.67 22.27 0.22 -6.45 16 17 N -0.49 -22.28 6.11 -911.39 -5.57 -27.85 16 18 C 0.00 -0.05 5.77 83.58 0.48 0.43 16 19 C -0.13 -4.49 8.47 30.94 0.26 -4.22 16 20 C 0.00 0.08 7.57 83.58 0.63 0.72 16 21 H 0.26 15.52 6.39 -92.71 -0.59 14.93 16 22 H 0.12 4.69 4.84 -2.91 -0.01 4.67 16 23 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 24 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 25 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 26 H 0.09 4.23 8.04 -2.91 -0.02 4.21 16 27 H 0.07 2.64 6.84 -2.39 -0.02 2.62 16 28 H 0.08 3.50 4.91 -2.39 -0.01 3.49 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.06 2.78 6.25 -2.39 -0.01 2.76 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -61.41 257.26 1.09 -60.32 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.29 Total: 22.26 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 3.03 Total: -51.73 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -5.28 Total: -81.77 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.92 kcal Total: -61.41 1.09 -60.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306151431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.870 kcal (2) G-P(sol) polarization free energy of solvation -61.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds