Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00276 * 2 1 4 4 H 1.08998 * 109.47097 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47317 * 240.00215 * 3 2 1 6 6 N 1.46501 * 109.46854 * 120.00001 * 3 2 1 7 7 C 1.39693 * 119.99851 * 205.00298 * 6 3 2 8 8 C 1.39341 * 119.94675 * 359.97438 * 7 6 3 9 9 C 1.38484 * 120.41568 * 180.02562 * 8 7 6 10 10 C 1.37678 * 120.32896 * 0.25527 * 9 8 7 11 11 C 1.40753 * 119.89300 * 359.45495 * 10 9 8 12 12 C 1.41407 * 120.20831 * 180.27274 * 11 10 9 13 13 H 1.08006 * 119.99991 * 204.63385 * 12 11 10 14 14 C 1.39926 * 120.00139 * 24.62781 * 12 11 10 15 15 N 1.30828 * 120.00037 * 17.73814 * 14 12 11 16 16 Si 1.86798 * 120.00135 * 197.72868 * 14 12 11 17 17 H 1.48502 * 109.47227 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47059 * 120.00422 * 16 14 12 19 19 H 1.48498 * 109.47571 * 240.00134 * 16 14 12 20 20 C 1.38268 * 119.95151 * 180.02562 * 7 6 3 21 21 H 1.08005 * 120.00170 * 180.02562 * 1 2 3 22 22 H 1.08001 * 120.00005 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00005 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46998 * 299.99586 * 5 3 2 25 25 H 1.09001 * 109.47229 * 59.99924 * 5 3 2 26 26 H 1.09002 * 109.47210 * 179.97438 * 5 3 2 27 27 H 0.96996 * 120.00256 * 25.00343 * 6 3 2 28 28 H 1.07990 * 119.79287 * 0.02562 * 8 7 6 29 29 H 1.08003 * 119.83136 * 179.97438 * 9 8 7 30 30 H 1.08000 * 120.05373 * 179.72241 * 10 9 8 31 31 H 0.97001 * 120.00359 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.16195 * 359.95171 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3861 -1.2492 6 7 2.9057 1.3825 1.1962 7 6 3.2825 2.6275 1.7057 8 6 2.8570 3.7949 1.0749 9 6 3.2251 5.0341 1.5714 10 6 4.0205 5.1261 2.6914 11 6 4.4529 3.9556 3.3427 12 6 5.2652 4.0424 4.4970 13 1 5.9123 3.2203 4.7649 14 6 5.2308 5.1935 5.2918 15 7 4.2298 6.0296 5.1892 16 14 6.6139 5.5362 6.4997 17 1 7.6191 4.4457 6.4236 18 1 7.2600 6.8291 6.1585 19 1 6.0626 5.6066 7.8767 20 6 4.0778 2.6995 2.8344 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 3.6515 0.5576 -1.2492 25 1 2.3164 1.3284 -2.1392 26 1 3.4878 2.3303 -1.2494 27 1 3.2018 0.5695 1.6344 28 1 2.2362 3.7328 0.1935 29 1 2.8903 5.9329 1.0748 30 1 4.3086 6.0948 3.0722 31 1 4.2057 6.8274 5.7405 32 1 4.4082 1.7953 3.3240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306179776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = 33.015153 kcal Electronic energy + Delta-G solvation = -13823.059475 eV Core-core repulsion = 11555.312400 eV Total energy + Delta-G solvation = -2267.747075 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.14484 -36.20952 -33.70397 -32.19322 -29.88420 -29.40766 -26.92587 -25.14595 -22.79409 -21.03033 -20.15972 -19.36936 -17.27107 -15.78810 -15.50775 -14.92082 -14.38907 -13.91571 -13.61677 -12.92581 -12.76615 -12.60520 -12.12202 -11.95498 -11.62445 -11.42227 -11.12563 -11.03452 -10.62449 -10.49765 -10.33028 -9.75816 -9.45322 -9.26628 -9.16777 -8.70360 -7.34659 -6.67858 -6.16173 -4.27465 2.25521 2.87349 3.12178 3.17946 3.25944 3.40797 3.99798 4.39760 4.75406 4.90317 5.19380 5.60318 5.62910 5.80931 5.89159 5.93540 6.20394 6.37515 6.41500 6.56532 6.63725 6.80064 7.07963 7.12721 7.15381 7.38598 7.44728 7.83546 7.95814 8.18517 8.29376 8.55464 8.69376 8.83214 9.03863 9.16292 10.28321 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.054861 B = 0.006219 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.258200 B = 4501.191301 C = 4659.215610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.181 3.819 4 H 0.077 0.923 5 C -0.163 4.163 6 N -0.755 5.755 7 C 0.226 3.774 8 C -0.303 4.303 9 C -0.075 4.075 10 C -0.200 4.200 11 C 0.141 3.859 12 C -0.464 4.464 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.793 5.793 16 Si 0.905 3.095 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.276 1.276 20 C -0.290 4.290 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.387 0.613 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.278 0.722 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -6.275 -6.645 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C 0.075 3.925 4 H 0.095 0.905 5 C -0.222 4.222 6 N -0.388 5.388 7 C 0.128 3.872 8 C -0.326 4.326 9 C -0.094 4.094 10 C -0.221 4.221 11 C 0.138 3.862 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.140 4.140 15 N -0.418 5.418 16 Si 0.730 3.270 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.314 4.314 21 H 0.115 0.885 22 H 0.116 0.884 23 H 0.125 0.875 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.262 -5.981 -6.683 9.543 hybrid contribution 0.601 -0.141 0.757 0.977 sum -2.661 -6.122 -5.925 8.926 Atomic orbital electron populations 1.23856 0.95876 1.01819 1.00447 1.23152 0.96127 0.98499 0.99794 1.19784 0.91947 0.94615 0.86124 0.90507 1.22254 1.00104 1.02667 0.97152 1.44488 1.58268 1.05532 1.30473 1.17476 0.93330 0.84067 0.92327 1.19888 1.15252 0.91677 1.05803 1.20438 0.97746 0.94956 0.96253 1.21167 1.05055 0.98922 0.96932 1.17347 0.88106 0.90215 0.90529 1.19577 1.21567 1.01052 1.07221 0.90641 1.25888 0.95463 0.95208 0.97433 1.69872 1.26851 1.10521 1.34567 0.86325 0.81756 0.79265 0.79700 1.18474 1.19769 1.20104 1.20396 1.11853 0.97157 1.01962 0.88526 0.88409 0.87477 0.92901 0.92846 0.91636 0.78010 0.89586 0.89709 0.86817 0.91125 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 14.32 29.02 0.42 -1.68 16 2 C -0.16 -1.99 8.96 -36.03 -0.32 -2.31 16 3 C 0.18 2.79 2.63 -69.09 -0.18 2.61 16 4 H 0.08 1.27 6.11 -51.93 -0.32 0.96 16 5 C -0.16 -2.30 9.40 37.16 0.35 -1.95 16 6 N -0.76 -13.93 5.24 -53.34 -0.28 -14.21 16 7 C 0.23 5.20 6.63 -83.85 -0.56 4.64 16 8 C -0.30 -7.02 8.85 -39.08 -0.35 -7.37 16 9 C -0.07 -1.83 10.01 -39.70 -0.40 -2.23 16 10 C -0.20 -5.42 8.69 -38.84 -0.34 -5.76 16 11 C 0.14 3.90 5.57 -106.85 -0.60 3.31 16 12 C -0.46 -12.72 9.05 -37.74 -0.34 -13.06 16 13 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 14 C 0.08 2.00 5.14 -17.35 -0.09 1.91 16 15 N -0.79 -21.11 10.96 55.55 0.61 -20.50 16 16 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 C -0.29 -7.37 9.63 -38.68 -0.37 -7.74 16 21 H 0.10 0.92 8.06 -52.48 -0.42 0.49 16 22 H 0.10 1.13 7.83 -52.49 -0.41 0.72 16 23 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 27 H 0.39 6.58 8.60 -40.82 -0.35 6.23 16 28 H 0.09 1.80 6.07 -52.49 -0.32 1.48 16 29 H 0.08 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.11 3.17 6.16 -52.49 -0.32 2.85 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 273.19 15.07 4.12 4.12 Total: -1.00 -28.43 273.19 -7.57 -35.99 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.21 Total: 10.17 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -2.77 Total: -29.62 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.33 Total: -34.71 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.43 -7.57 -35.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.007 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds