Wall clock time and date at job start Mon Mar 30 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00276 * 2 1 4 4 H 1.08998 * 109.47097 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47317 * 240.00215 * 3 2 1 6 6 N 1.46501 * 109.46854 * 120.00001 * 3 2 1 7 7 C 1.39693 * 119.99851 * 205.00298 * 6 3 2 8 8 C 1.39341 * 119.94675 * 359.97438 * 7 6 3 9 9 C 1.38484 * 120.41568 * 180.02562 * 8 7 6 10 10 C 1.37678 * 120.32896 * 0.25527 * 9 8 7 11 11 C 1.40753 * 119.89300 * 359.45495 * 10 9 8 12 12 C 1.41407 * 120.20831 * 180.27274 * 11 10 9 13 13 H 1.08006 * 119.99991 * 204.63385 * 12 11 10 14 14 C 1.39926 * 120.00139 * 24.62781 * 12 11 10 15 15 N 1.30828 * 120.00037 * 17.73814 * 14 12 11 16 16 Si 1.86798 * 120.00135 * 197.72868 * 14 12 11 17 17 H 1.48502 * 109.47227 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47059 * 120.00422 * 16 14 12 19 19 H 1.48498 * 109.47571 * 240.00134 * 16 14 12 20 20 C 1.38268 * 119.95151 * 180.02562 * 7 6 3 21 21 H 1.08005 * 120.00170 * 180.02562 * 1 2 3 22 22 H 1.08001 * 120.00005 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00005 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46998 * 299.99586 * 5 3 2 25 25 H 1.09001 * 109.47229 * 59.99924 * 5 3 2 26 26 H 1.09002 * 109.47210 * 179.97438 * 5 3 2 27 27 H 0.96996 * 120.00256 * 25.00343 * 6 3 2 28 28 H 1.07990 * 119.79287 * 0.02562 * 8 7 6 29 29 H 1.08003 * 119.83136 * 179.97438 * 9 8 7 30 30 H 1.08000 * 120.05373 * 179.72241 * 10 9 8 31 31 H 0.97001 * 120.00359 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.16195 * 359.95171 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3861 -1.2492 6 7 2.9057 1.3825 1.1962 7 6 3.2825 2.6275 1.7057 8 6 2.8570 3.7949 1.0749 9 6 3.2251 5.0341 1.5714 10 6 4.0205 5.1261 2.6914 11 6 4.4529 3.9556 3.3427 12 6 5.2652 4.0424 4.4970 13 1 5.9123 3.2203 4.7649 14 6 5.2308 5.1935 5.2918 15 7 4.2298 6.0296 5.1892 16 14 6.6139 5.5362 6.4997 17 1 7.6191 4.4457 6.4236 18 1 7.2600 6.8291 6.1585 19 1 6.0626 5.6066 7.8767 20 6 4.0778 2.6995 2.8344 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 3.6515 0.5576 -1.2492 25 1 2.3164 1.3284 -2.1392 26 1 3.4878 2.3303 -1.2494 27 1 3.2018 0.5695 1.6344 28 1 2.2362 3.7328 0.1935 29 1 2.8903 5.9329 1.0748 30 1 4.3086 6.0948 3.0722 31 1 4.2057 6.8274 5.7405 32 1 4.4082 1.7953 3.3240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306179776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:42 Heat of formation + Delta-G solvation = 17.306221 kcal Electronic energy + Delta-G solvation = -13823.740666 eV Core-core repulsion = 11555.312400 eV Total energy + Delta-G solvation = -2268.428266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84689 -37.74487 -35.48003 -33.68859 -31.71823 -30.81984 -28.60010 -27.11792 -24.07596 -22.82467 -21.91235 -20.61508 -19.13939 -17.39239 -17.12227 -16.54364 -16.23322 -15.25634 -15.01055 -14.50389 -14.34442 -14.13571 -13.94634 -13.31936 -13.08901 -12.89725 -12.81445 -12.69663 -12.35468 -12.08428 -11.68040 -11.58310 -11.18186 -11.06506 -10.55186 -10.35651 -9.33541 -8.60655 -7.92995 -6.32302 1.04512 1.27424 1.36169 1.39866 1.54519 1.59354 2.23369 2.80584 2.95561 3.84076 3.86128 4.17273 4.46456 4.48391 4.54386 4.73522 4.81906 4.92113 5.06804 5.14649 5.17100 5.25805 5.31749 5.42816 5.59213 5.67411 5.83806 5.97322 6.03534 6.20863 6.32063 6.63742 6.90399 7.02693 7.06404 7.26570 8.38042 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.054861 B = 0.006219 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.258200 B = 4501.191301 C = 4659.215610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.171 4.171 3 C 0.176 3.824 4 H 0.065 0.935 5 C -0.157 4.157 6 N -0.747 5.747 7 C 0.236 3.764 8 C -0.304 4.304 9 C -0.075 4.075 10 C -0.234 4.234 11 C 0.112 3.888 12 C -0.503 4.503 13 H 0.072 0.928 14 C 0.036 3.964 15 N -0.825 5.825 16 Si 0.983 3.017 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.265 1.265 20 C -0.313 4.313 21 H 0.121 0.879 22 H 0.095 0.905 23 H 0.124 0.876 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.394 0.606 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.287 0.713 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 -7.350 -7.346 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.071 3.929 4 H 0.083 0.917 5 C -0.216 4.216 6 N -0.378 5.378 7 C 0.135 3.865 8 C -0.327 4.327 9 C -0.094 4.094 10 C -0.254 4.254 11 C 0.109 3.891 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.451 5.451 16 Si 0.803 3.197 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.189 1.189 20 C -0.338 4.338 21 H 0.140 0.860 22 H 0.113 0.887 23 H 0.142 0.858 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.228 0.772 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.839 -7.094 -7.419 10.959 hybrid contribution 0.626 0.111 0.848 1.060 sum -3.213 -6.984 -6.571 10.113 Atomic orbital electron populations 1.24095 0.95551 1.02938 0.97983 1.23045 0.96446 0.97559 1.01945 1.19985 0.91674 0.96062 0.85133 0.91653 1.22184 1.00214 1.01704 0.97491 1.44610 1.57867 1.04181 1.31160 1.17538 0.91782 0.85967 0.91248 1.20180 1.15013 0.91183 1.06355 1.20732 0.96653 0.96630 0.95397 1.21101 1.07544 0.98093 0.98700 1.17721 0.88828 0.91324 0.91234 1.19827 1.22748 1.02324 1.08314 0.91019 1.26772 0.97714 0.94333 0.99073 1.69926 1.28433 1.11084 1.35640 0.85164 0.78079 0.79190 0.77239 1.18255 1.18806 1.18946 1.20519 1.13238 0.96591 1.03412 0.86042 0.88697 0.85834 0.92197 0.90368 0.93857 0.77151 0.87006 0.87434 0.88597 0.90265 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 14.32 67.78 0.97 -2.31 16 2 C -0.17 -3.82 8.96 25.65 0.23 -3.59 16 3 C 0.18 5.03 2.63 44.24 0.12 5.15 16 4 H 0.07 2.02 6.11 -2.39 -0.01 2.01 16 5 C -0.16 -4.06 9.40 71.98 0.68 -3.39 16 6 N -0.75 -26.52 5.24 -322.68 -1.69 -28.21 16 7 C 0.24 10.76 6.63 38.16 0.25 11.02 16 8 C -0.30 -13.86 8.85 22.59 0.20 -13.66 16 9 C -0.08 -3.70 10.01 22.20 0.22 -3.48 16 10 C -0.23 -13.08 8.69 22.75 0.20 -12.88 16 11 C 0.11 6.42 5.57 -21.31 -0.12 6.30 16 12 C -0.50 -28.55 9.05 23.46 0.21 -28.34 16 13 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 14 C 0.04 1.88 5.14 85.25 0.44 2.32 16 15 N -0.82 -45.06 10.96 21.82 0.24 -44.82 16 16 Si 0.98 39.61 29.59 68.60 2.03 41.64 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.31 -16.30 9.63 22.85 0.22 -16.08 16 21 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 22 H 0.09 1.91 7.83 -2.91 -0.02 1.89 16 23 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 24 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.30 7.69 -2.39 -0.02 1.29 16 27 H 0.39 12.86 8.60 -92.71 -0.80 12.06 16 28 H 0.11 4.46 6.07 -2.92 -0.02 4.44 16 29 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 31 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 32 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.51 273.19 4.50 -58.00 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.31 Total: 32.34 kcal Atomic # 6 Polarization: -62.56 SS G_CDS: 3.62 Total: -58.94 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.45 Total: -73.04 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -62.51 4.50 -58.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.309 kcal (2) G-P(sol) polarization free energy of solvation -62.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds