Wall clock time and date at job start Mon Mar 30 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.30999 * 120.00263 * 2 1 4 4 C 1.50697 * 120.00113 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46965 * 124.99973 * 4 3 2 6 6 C 1.39685 * 119.99700 * 179.97438 * 5 4 3 7 7 C 1.39332 * 119.95286 * 0.25810 * 6 5 4 8 8 C 1.38484 * 120.41938 * 180.29918 * 7 6 5 9 9 C 1.37692 * 120.32684 * 359.44613 * 8 7 6 10 10 C 1.40747 * 119.89306 * 0.27121 * 9 8 7 11 11 C 1.41404 * 120.20954 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00531 * 150.21463 * 11 10 9 13 13 C 1.39934 * 119.99639 * 330.21752 * 11 10 9 14 14 N 1.30827 * 119.99779 * 161.72456 * 13 11 10 15 15 Si 1.86803 * 120.00247 * 341.71763 * 13 11 10 16 16 H 1.48496 * 109.46678 * 95.41193 * 15 13 11 17 17 H 1.48497 * 109.46948 * 215.41641 * 15 13 11 18 18 H 1.48498 * 109.46882 * 335.41809 * 15 13 11 19 19 C 1.38283 * 119.94815 * 179.97438 * 6 5 4 20 20 H 1.08996 * 109.47366 * 300.00628 * 1 2 3 21 21 H 1.09005 * 109.46599 * 59.99992 * 1 2 3 22 22 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99681 * 179.97438 * 2 1 3 24 24 H 1.07994 * 119.99511 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47048 * 5.00403 * 4 3 2 26 26 H 1.09001 * 109.47560 * 245.00627 * 4 3 2 27 27 H 0.96999 * 119.99803 * 0.02562 * 5 4 3 28 28 H 1.07999 * 119.79099 * 0.03744 * 7 6 5 29 29 H 1.08004 * 119.83624 * 179.71458 * 8 7 6 30 30 H 1.07998 * 120.04897 * 180.29890 * 9 8 7 31 31 H 0.96999 * 120.00289 * 179.97438 * 14 13 11 32 32 H 1.07996 * 120.16237 * 359.96038 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6690 1.1344 0.0006 5 7 4.1578 1.9264 -1.1309 6 6 5.5312 2.0731 -1.3391 7 6 6.4354 1.4614 -0.4733 8 6 7.7990 1.6056 -0.6671 9 6 8.2764 2.3463 -1.7251 10 6 7.3751 2.9652 -2.6114 11 6 7.8580 3.7279 -3.6998 12 1 7.2802 3.7967 -4.6096 13 6 9.0847 4.3935 -3.5980 14 7 9.7042 4.7922 -4.6791 15 14 9.8376 4.7128 -1.9185 16 1 10.8083 3.6356 -1.5984 17 1 10.5376 6.0224 -1.9308 18 1 8.7654 4.7342 -0.8914 19 6 5.9914 2.8205 -2.4077 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 2.0470 -0.9354 0.0004 24 1 1.6220 2.0697 0.0004 25 1 4.0324 0.1106 -0.0887 26 1 4.0321 1.5688 0.9320 27 1 3.5277 2.3494 -1.7349 28 1 6.0705 0.8746 0.3567 29 1 8.4914 1.1311 0.0125 30 1 9.3407 2.4518 -1.8748 31 1 10.5544 5.2539 -4.6086 32 1 5.2915 3.2907 -3.0825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307023826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:01 Heat of formation + Delta-G solvation = 26.721508 kcal Electronic energy + Delta-G solvation = -13524.116670 eV Core-core repulsion = 11256.096682 eV Total energy + Delta-G solvation = -2268.019988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.15911 -36.22578 -34.18712 -32.99070 -30.14636 -29.67395 -27.05221 -25.09201 -23.59982 -21.11008 -20.16470 -19.53223 -17.40074 -15.90031 -15.64420 -14.68048 -14.50223 -14.45310 -13.84058 -13.46186 -13.14667 -12.83231 -12.52655 -12.39258 -11.89880 -11.66678 -11.41474 -11.11972 -10.80249 -10.71154 -10.39998 -9.74150 -9.46523 -9.27516 -9.15840 -8.79872 -7.55530 -6.84965 -6.42156 -4.40749 2.04142 2.73676 2.96225 3.21228 3.31167 3.43320 4.09659 4.27356 4.64043 4.77631 4.98514 5.26313 5.44016 5.54834 5.61333 5.66186 5.86701 5.91439 6.08558 6.36435 6.54721 6.61029 6.70953 6.83787 6.90616 7.04230 7.36870 7.61649 7.73797 7.84003 8.03858 8.39882 8.48695 8.55407 8.82559 8.95595 10.18016 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.060337 B = 0.005776 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.949260 B = 4846.535436 C = 5111.487600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.152 4.152 3 C -0.170 4.170 4 C 0.163 3.837 5 N -0.758 5.758 6 C 0.234 3.766 7 C -0.302 4.302 8 C -0.048 4.048 9 C -0.272 4.272 10 C 0.126 3.874 11 C -0.452 4.452 12 H 0.088 0.912 13 C 0.086 3.914 14 N -0.814 5.814 15 Si 0.915 3.085 16 H -0.272 1.272 17 H -0.294 1.294 18 H -0.244 1.244 19 C -0.278 4.278 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.391 0.609 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.283 0.717 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -5.493 8.450 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 C -0.188 4.188 4 C 0.038 3.962 5 N -0.391 5.391 6 C 0.135 3.865 7 C -0.325 4.325 8 C -0.067 4.067 9 C -0.292 4.292 10 C 0.122 3.878 11 C -0.481 4.481 12 H 0.106 0.894 13 C -0.132 4.132 14 N -0.439 5.439 15 Si 0.742 3.258 16 H -0.198 1.198 17 H -0.222 1.222 18 H -0.168 1.168 19 C -0.302 4.302 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.224 0.776 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.663 -5.479 8.441 14.662 hybrid contribution 0.247 0.337 0.381 0.565 sum -10.416 -5.142 8.822 14.586 Atomic orbital electron populations 1.20856 0.93141 1.02253 1.01953 1.22896 0.96106 0.98093 1.00013 1.22956 0.95816 0.98389 1.01655 1.20119 0.89874 0.95686 0.90505 1.44454 1.04086 1.59002 1.31565 1.17573 0.82005 0.93176 0.93754 1.19911 0.92743 1.14637 1.05192 1.20369 0.94146 0.96377 0.95812 1.20900 0.97951 1.08599 1.01755 1.17443 0.90737 0.89163 0.90452 1.19452 1.02563 1.25844 1.00231 0.89411 1.26136 0.95312 0.93098 0.98680 1.69709 1.14085 1.29504 1.30608 0.86270 0.79845 0.76488 0.83214 1.19793 1.22229 1.16758 1.20408 0.95371 1.12279 1.02170 0.91763 0.91653 0.92112 0.87246 0.87154 0.92782 0.92370 0.77571 0.89051 0.89024 0.88539 0.90647 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.17 36.01 0.37 -0.65 16 2 C -0.15 -1.56 9.87 -36.03 -0.36 -1.92 16 3 C -0.17 -1.97 9.27 -36.03 -0.33 -2.31 16 4 C 0.16 2.35 5.34 -5.19 -0.03 2.32 16 5 N -0.76 -13.28 5.72 -59.86 -0.34 -13.62 16 6 C 0.23 5.12 6.64 -83.86 -0.56 4.56 16 7 C -0.30 -6.57 9.32 -39.08 -0.36 -6.93 16 8 C -0.05 -1.09 10.02 -39.69 -0.40 -1.49 16 9 C -0.27 -6.87 7.17 -38.83 -0.28 -7.15 16 10 C 0.13 3.33 5.10 -106.85 -0.55 2.79 16 11 C -0.45 -12.71 9.57 -37.74 -0.36 -13.08 16 12 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 13 C 0.09 2.33 5.40 -17.34 -0.09 2.24 16 14 N -0.81 -22.40 13.93 55.55 0.77 -21.62 16 15 Si 0.91 21.70 24.52 -169.99 -4.17 17.53 16 16 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.24 -5.97 6.86 56.52 0.39 -5.58 16 19 C -0.28 -6.77 9.63 -38.67 -0.37 -7.15 16 20 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.11 1.09 7.84 -52.48 -0.41 0.68 16 24 H 0.11 1.20 8.05 -52.49 -0.42 0.78 16 25 H 0.05 0.79 7.58 -51.93 -0.39 0.40 16 26 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 27 H 0.39 6.27 8.47 -40.82 -0.35 5.93 16 28 H 0.09 1.76 6.70 -52.49 -0.35 1.41 16 29 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.10 2.43 4.73 -52.49 -0.25 2.19 16 31 H 0.28 7.05 8.30 -40.82 -0.34 6.72 16 32 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 270.56 15.07 4.08 4.08 Total: -1.00 -28.82 270.56 -7.27 -36.09 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.29 Total: 6.30 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -3.32 Total: -28.76 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.43 Total: -35.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.17 Total: 17.53 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.82 -7.27 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307023826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.816 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds