Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.30999 * 120.00263 * 2 1 4 4 C 1.50697 * 120.00113 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46965 * 124.99973 * 4 3 2 6 6 C 1.39685 * 119.99700 * 179.97438 * 5 4 3 7 7 C 1.39332 * 119.95286 * 0.25810 * 6 5 4 8 8 C 1.38484 * 120.41938 * 180.29918 * 7 6 5 9 9 C 1.37692 * 120.32684 * 359.44613 * 8 7 6 10 10 C 1.40747 * 119.89306 * 0.27121 * 9 8 7 11 11 C 1.41404 * 120.20954 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00531 * 150.21463 * 11 10 9 13 13 C 1.39934 * 119.99639 * 330.21752 * 11 10 9 14 14 N 1.30827 * 119.99779 * 161.72456 * 13 11 10 15 15 Si 1.86803 * 120.00247 * 341.71763 * 13 11 10 16 16 H 1.48496 * 109.46678 * 95.41193 * 15 13 11 17 17 H 1.48497 * 109.46948 * 215.41641 * 15 13 11 18 18 H 1.48498 * 109.46882 * 335.41809 * 15 13 11 19 19 C 1.38283 * 119.94815 * 179.97438 * 6 5 4 20 20 H 1.08996 * 109.47366 * 300.00628 * 1 2 3 21 21 H 1.09005 * 109.46599 * 59.99992 * 1 2 3 22 22 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99681 * 179.97438 * 2 1 3 24 24 H 1.07994 * 119.99511 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47048 * 5.00403 * 4 3 2 26 26 H 1.09001 * 109.47560 * 245.00627 * 4 3 2 27 27 H 0.96999 * 119.99803 * 0.02562 * 5 4 3 28 28 H 1.07999 * 119.79099 * 0.03744 * 7 6 5 29 29 H 1.08004 * 119.83624 * 179.71458 * 8 7 6 30 30 H 1.07998 * 120.04897 * 180.29890 * 9 8 7 31 31 H 0.96999 * 120.00289 * 179.97438 * 14 13 11 32 32 H 1.07996 * 120.16237 * 359.96038 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6690 1.1344 0.0006 5 7 4.1578 1.9264 -1.1309 6 6 5.5312 2.0731 -1.3391 7 6 6.4354 1.4614 -0.4733 8 6 7.7990 1.6056 -0.6671 9 6 8.2764 2.3463 -1.7251 10 6 7.3751 2.9652 -2.6114 11 6 7.8580 3.7279 -3.6998 12 1 7.2802 3.7967 -4.6096 13 6 9.0847 4.3935 -3.5980 14 7 9.7042 4.7922 -4.6791 15 14 9.8376 4.7128 -1.9185 16 1 10.8083 3.6356 -1.5984 17 1 10.5376 6.0224 -1.9308 18 1 8.7654 4.7342 -0.8914 19 6 5.9914 2.8205 -2.4077 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 2.0470 -0.9354 0.0004 24 1 1.6220 2.0697 0.0004 25 1 4.0324 0.1106 -0.0887 26 1 4.0321 1.5688 0.9320 27 1 3.5277 2.3494 -1.7349 28 1 6.0705 0.8746 0.3567 29 1 8.4914 1.1311 0.0125 30 1 9.3407 2.4518 -1.8748 31 1 10.5544 5.2539 -4.6086 32 1 5.2915 3.2907 -3.0825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307023826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = 9.499554 kcal Electronic energy + Delta-G solvation = -13524.863470 eV Core-core repulsion = 11256.096682 eV Total energy + Delta-G solvation = -2268.766788 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88480 -37.50966 -35.69581 -34.66246 -32.05090 -31.00843 -28.35897 -27.01308 -24.78286 -22.87897 -21.95022 -20.48787 -19.25712 -17.71461 -17.12429 -16.39610 -16.25197 -15.59351 -15.09858 -14.84674 -14.40234 -14.14805 -14.03910 -13.98829 -13.62238 -13.10113 -12.78688 -12.63366 -12.37496 -12.27134 -11.95683 -11.61845 -11.37087 -11.07164 -10.63788 -9.97542 -9.47669 -8.86904 -8.08427 -6.49675 0.86206 1.09454 1.17229 1.30353 1.44852 1.54056 2.18227 2.67532 2.89050 3.61652 3.87252 4.16558 4.36748 4.48698 4.59380 4.64969 4.72950 4.74774 4.84512 4.92457 5.00192 5.09626 5.16274 5.20594 5.55214 5.72386 5.75874 5.86540 5.88094 5.99598 6.10887 6.38999 6.70382 6.83045 6.90228 7.09833 8.22176 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.060337 B = 0.005776 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.949260 B = 4846.535436 C = 5111.487600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 C -0.187 4.187 4 C 0.161 3.839 5 N -0.750 5.750 6 C 0.240 3.760 7 C -0.293 4.293 8 C -0.047 4.047 9 C -0.294 4.294 10 C 0.107 3.893 11 C -0.491 4.491 12 H 0.051 0.949 13 C 0.049 3.951 14 N -0.854 5.854 15 Si 0.972 3.028 16 H -0.258 1.258 17 H -0.279 1.279 18 H -0.256 1.256 19 C -0.299 4.299 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.398 0.602 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.293 0.707 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 -6.927 11.211 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C -0.205 4.205 4 C 0.037 3.963 5 N -0.381 5.381 6 C 0.138 3.862 7 C -0.315 4.315 8 C -0.066 4.066 9 C -0.314 4.314 10 C 0.104 3.896 11 C -0.521 4.521 12 H 0.070 0.930 13 C -0.165 4.165 14 N -0.481 5.481 15 Si 0.796 3.204 16 H -0.184 1.184 17 H -0.206 1.206 18 H -0.180 1.180 19 C -0.323 4.323 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.232 0.768 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.883 -6.926 11.205 17.740 hybrid contribution 0.360 0.602 -0.391 0.803 sum -11.523 -6.324 10.813 17.021 Atomic orbital electron populations 1.20912 0.91497 1.03352 1.02561 1.23154 0.97399 0.97732 0.97275 1.22782 0.94119 0.99335 1.04293 1.20280 0.91847 0.95060 0.89097 1.44615 1.02524 1.58571 1.32402 1.17667 0.84230 0.91799 0.92539 1.20355 0.92424 1.13451 1.05306 1.20775 0.95370 0.95186 0.95254 1.20972 0.97665 1.09954 1.02841 1.17596 0.92057 0.89351 0.90582 1.19459 1.03712 1.28773 1.00147 0.93028 1.26816 0.95343 0.92485 1.01829 1.69733 1.15112 1.31073 1.32182 0.85400 0.78956 0.77343 0.78744 1.18360 1.20573 1.17958 1.20525 0.94821 1.13495 1.03452 0.90786 0.91317 0.90857 0.86881 0.86467 0.92481 0.92174 0.76821 0.85773 0.85471 0.88921 0.89689 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 10.17 71.24 0.72 -0.91 16 2 C -0.14 -2.36 9.87 25.65 0.25 -2.10 16 3 C -0.19 -3.79 9.27 25.65 0.24 -3.55 16 4 C 0.16 4.12 5.34 85.63 0.46 4.58 16 5 N -0.75 -24.54 5.72 -343.29 -1.96 -26.51 16 6 C 0.24 10.05 6.64 38.16 0.25 10.31 16 7 C -0.29 -11.73 9.32 22.59 0.21 -11.52 16 8 C -0.05 -2.01 10.02 22.20 0.22 -1.79 16 9 C -0.29 -14.63 7.17 22.75 0.16 -14.47 16 10 C 0.11 5.81 5.10 -21.31 -0.11 5.70 16 11 C -0.49 -29.11 9.57 23.46 0.22 -28.89 16 12 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 13 C 0.05 2.76 5.40 85.25 0.46 3.22 16 14 N -0.85 -48.76 13.93 21.82 0.30 -48.45 16 15 Si 0.97 45.09 24.52 68.60 1.68 46.78 16 16 H -0.26 -11.30 6.71 99.48 0.67 -10.63 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.26 -12.20 6.86 99.48 0.68 -11.52 16 19 C -0.30 -14.68 9.63 22.86 0.22 -14.46 16 20 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.11 1.87 7.84 -2.91 -0.02 1.85 16 24 H 0.12 2.22 8.05 -2.91 -0.02 2.20 16 25 H 0.06 1.45 7.58 -2.39 -0.02 1.44 16 26 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 27 H 0.40 12.06 8.47 -92.71 -0.79 11.28 16 28 H 0.12 4.17 6.70 -2.91 -0.02 4.15 16 29 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.09 4.61 4.73 -2.91 -0.01 4.60 16 31 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 32 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -63.29 270.56 3.60 -59.69 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.26 Total: 22.37 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 3.32 Total: -53.88 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.66 Total: -74.96 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.68 Total: 46.78 kcal Total: -63.29 3.60 -59.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307023826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.192 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds