Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.34779 * 2 1 4 4 C 1.36939 * 119.99972 * 60.67290 * 3 2 1 5 5 H 1.07998 * 119.99857 * 0.02562 * 4 3 2 6 6 C 1.38809 * 120.00115 * 180.02562 * 4 3 2 7 7 N 1.31624 * 119.99906 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00065 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46742 * 90.00434 * 8 6 4 10 10 H 1.48500 * 109.47281 * 209.99854 * 8 6 4 11 11 H 1.48493 * 109.47343 * 330.00697 * 8 6 4 12 12 C 1.54194 * 109.97657 * 237.78388 * 2 1 3 13 13 C 1.54350 * 102.46126 * 267.23774 * 12 2 1 14 14 C 1.51376 * 105.16775 * 333.83524 * 13 12 2 15 15 C 1.38495 * 130.39085 * 197.22004 * 14 13 12 16 16 C 1.38101 * 120.21833 * 180.02562 * 15 14 13 17 17 C 1.38255 * 119.93403 * 359.97438 * 16 15 14 18 18 C 1.38105 * 119.93270 * 359.97438 * 17 16 15 19 19 C 1.38215 * 109.75718 * 17.20003 * 14 13 12 20 20 H 1.09007 * 109.46633 * 299.32736 * 1 2 3 21 21 H 1.09000 * 109.47356 * 59.32240 * 1 2 3 22 22 H 1.08996 * 109.46856 * 179.32791 * 1 2 3 23 23 H 0.97001 * 120.00570 * 240.67845 * 3 2 1 24 24 H 0.97005 * 119.99649 * 179.97438 * 7 6 4 25 25 H 1.08994 * 110.62511 * 149.05989 * 12 2 1 26 26 H 1.09003 * 110.94978 * 25.55467 * 12 2 1 27 27 H 1.08994 * 110.30160 * 214.92116 * 13 12 2 28 28 H 1.08991 * 110.38948 * 92.80177 * 13 12 2 29 29 H 1.08003 * 119.88963 * 359.97438 * 15 14 13 30 30 H 1.07998 * 120.03745 * 179.97438 * 16 15 14 31 31 H 1.07996 * 120.03595 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.88968 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0394 1.3736 0.0000 4 6 1.7329 2.2176 1.0339 5 1 1.1159 1.8704 1.8496 6 6 2.2151 3.5192 1.0337 7 7 2.9665 3.9424 0.0394 8 14 1.7963 4.6706 2.4438 9 1 2.8300 4.5519 3.5034 10 1 1.7564 6.0691 1.9458 11 1 0.4699 4.3063 3.0032 12 6 2.0568 -0.7726 -1.2261 13 6 2.2388 -2.1998 -0.6673 14 6 2.4657 -2.0177 0.8182 15 6 2.9901 -2.8880 1.7593 16 6 3.1031 -2.4984 3.0794 17 6 2.6923 -1.2355 3.4636 18 6 2.1701 -0.3659 2.5264 19 6 2.0553 -0.7550 1.2021 20 1 -0.3633 0.5034 0.8960 21 1 -0.3634 0.5243 -0.8838 22 1 -0.3633 -1.0276 -0.0121 23 1 2.5938 1.6854 -0.7324 24 1 3.3032 4.8522 0.0391 25 1 3.0102 -0.3619 -1.5580 26 1 1.3268 -0.7636 -2.0355 27 1 3.1041 -2.6780 -1.1261 28 1 1.3419 -2.7936 -0.8429 29 1 3.3108 -3.8749 1.4600 30 1 3.5121 -3.1796 3.8109 31 1 2.7796 -0.9293 4.4956 32 1 1.8497 0.6207 2.8273 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307314108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = 16.568222 kcal Electronic energy + Delta-G solvation = -14615.829602 eV Core-core repulsion = 12347.369335 eV Total energy + Delta-G solvation = -2268.460268 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16311 -37.53896 -35.34247 -33.06522 -31.13604 -30.00548 -29.29475 -26.54574 -24.60728 -23.43732 -21.77674 -20.44342 -18.96934 -17.25911 -16.72143 -16.16216 -15.84143 -15.66672 -15.06822 -14.56635 -14.26917 -13.76502 -13.71659 -13.26509 -13.06814 -12.91804 -12.83109 -12.43876 -12.27859 -12.22793 -11.94539 -11.68087 -11.45072 -11.17674 -10.92032 -9.55176 -9.29299 -9.00572 -7.91624 -5.17820 0.60138 0.66744 1.43866 1.44662 1.52402 2.55638 3.00650 3.41764 3.62910 3.81068 4.05115 4.20770 4.27352 4.35145 4.41165 4.48732 4.74292 4.83250 4.88798 4.89559 5.01232 5.05780 5.21475 5.25021 5.30903 5.42741 5.52802 5.60130 5.70428 5.79902 6.00742 6.27471 6.34045 7.36649 8.12110 8.36497 9.32328 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.010751 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.851976 B = 2603.877314 C = 3155.205092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.216 3.784 3 N -0.726 5.726 4 C -0.214 4.214 5 H 0.076 0.924 6 C -0.079 4.079 7 N -0.971 5.971 8 Si 0.959 3.041 9 H -0.290 1.290 10 H -0.296 1.296 11 H -0.270 1.270 12 C -0.117 4.117 13 C -0.066 4.066 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.122 4.122 19 C -0.103 4.103 20 H 0.032 0.968 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.372 0.628 24 H 0.248 0.752 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -15.019 1.640 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.126 3.874 3 N -0.364 5.364 4 C -0.346 4.346 5 H 0.094 0.906 6 C -0.271 4.271 7 N -0.622 5.622 8 Si 0.789 3.211 9 H -0.218 1.218 10 H -0.223 1.223 11 H -0.195 1.195 12 C -0.155 4.155 13 C -0.103 4.103 14 C -0.117 4.117 15 C -0.135 4.135 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.140 4.140 19 C -0.106 4.106 20 H 0.051 0.949 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.205 0.795 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.081 -14.937 1.779 15.186 hybrid contribution 0.148 1.598 0.616 1.719 sum -1.933 -13.339 2.396 13.690 Atomic orbital electron populations 1.22063 0.95810 1.00790 1.00844 1.19546 0.92924 0.83641 0.91259 1.42716 1.60472 1.08197 1.25062 1.19482 1.23420 0.91980 0.99698 0.90631 1.25434 1.01816 0.99196 1.00625 1.69808 1.41348 1.17200 1.33893 0.85341 0.77995 0.78511 0.79285 1.21788 1.22321 1.19528 1.22500 1.01308 0.95036 0.96661 1.20986 1.03399 0.96390 0.89491 1.20957 0.99292 0.94173 0.97243 1.20890 1.00074 0.99999 0.92494 1.21294 1.00546 0.96176 0.96571 1.21295 1.00179 0.94771 0.99502 1.21075 1.00154 0.99326 0.93472 1.21398 0.98469 0.95727 0.94957 0.94906 0.92926 0.91269 0.79511 0.94337 0.92182 0.88975 0.89136 0.88263 0.83643 0.83275 0.85091 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.41 71.98 0.61 -4.44 16 2 C 0.22 8.70 1.00 3.47 0.00 8.70 16 3 N -0.73 -36.99 5.17 -303.94 -1.57 -38.56 16 4 C -0.21 -11.85 7.94 84.03 0.67 -11.18 16 5 H 0.08 4.10 5.47 -2.91 -0.02 4.08 16 6 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 7 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 8 Si 0.96 47.12 29.55 68.60 2.03 49.15 16 9 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 10 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 C -0.12 -3.77 6.19 31.46 0.19 -3.58 16 13 C -0.07 -1.71 6.76 30.52 0.21 -1.51 16 14 C -0.12 -3.72 6.14 -19.59 -0.12 -3.84 16 15 C -0.12 -3.19 10.04 22.30 0.22 -2.97 16 16 C -0.13 -3.51 10.05 22.24 0.22 -3.29 16 17 C -0.14 -4.60 10.05 22.24 0.22 -4.37 16 18 C -0.12 -4.96 9.29 22.30 0.21 -4.75 16 19 C -0.10 -4.07 5.08 -19.60 -0.10 -4.17 16 20 H 0.03 1.33 7.41 -2.38 -0.02 1.31 16 21 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.37 20.48 7.55 -92.71 -0.70 19.78 16 24 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 25 H 0.06 2.09 7.88 -2.39 -0.02 2.07 16 26 H 0.09 2.56 7.89 -2.39 -0.02 2.54 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.10 4.60 5.49 -2.91 -0.02 4.59 16 Total: -1.00 -66.00 262.29 3.95 -62.04 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.41 Total: 26.93 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 2.80 Total: -39.54 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -1.29 Total: -98.58 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -66.00 3.95 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.610 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds