Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00306 * 2 1 4 4 H 1.48504 * 109.47292 * 270.28151 * 3 2 1 5 5 H 1.48498 * 109.47049 * 30.27670 * 3 2 1 6 6 H 1.48501 * 109.47466 * 150.27991 * 3 2 1 7 7 C 1.37878 * 119.99688 * 180.27741 * 2 1 3 8 8 H 1.08005 * 119.99859 * 359.72555 * 7 2 1 9 9 C 1.50697 * 119.99857 * 179.71959 * 7 2 1 10 10 C 1.53003 * 109.47122 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47216 * 185.44840 * 10 9 7 12 12 C 1.47894 * 111.00286 * 65.29578 * 11 10 9 13 13 C 1.53993 * 107.06105 * 214.15422 * 12 11 10 14 14 H 1.08995 * 110.30773 * 242.30692 * 13 12 11 15 15 F 1.39906 * 110.30238 * 120.24136 * 13 12 11 16 16 C 1.54591 * 105.13953 * 1.23096 * 13 12 11 17 17 C 1.48535 * 110.99910 * 307.90051 * 11 10 9 18 18 H 1.08997 * 110.66321 * 41.28625 * 17 11 10 19 19 C 1.53001 * 110.66841 * 278.15750 * 17 11 10 20 20 O 1.42897 * 109.46892 * 294.99882 * 19 17 11 21 21 H 0.97005 * 119.99624 * 359.71788 * 1 2 3 22 22 H 1.08998 * 109.47506 * 300.00224 * 9 7 2 23 23 H 1.08999 * 109.47348 * 60.00189 * 9 7 2 24 24 H 1.09000 * 109.47348 * 305.45161 * 10 9 7 25 25 H 1.09009 * 109.47128 * 65.44574 * 10 9 7 26 26 H 1.09007 * 109.91626 * 333.51609 * 12 11 10 27 27 H 1.09007 * 109.91386 * 94.60682 * 12 11 10 28 28 H 1.08999 * 110.72869 * 140.31139 * 16 13 12 29 29 H 1.09000 * 110.71823 * 263.59610 * 16 13 12 30 30 H 1.09005 * 109.46894 * 54.99851 * 19 17 11 31 31 H 1.09000 * 109.47458 * 175.00025 * 19 17 11 32 32 H 0.96705 * 113.99540 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4908 2.0498 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4384 0.6941 7 6 2.0045 -1.1941 -0.0058 8 1 1.4644 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0122 10 6 4.0214 -2.6366 -0.0184 11 7 5.4851 -2.6391 0.1069 12 6 5.9055 -2.1066 1.4210 13 6 7.2297 -1.3522 1.2001 14 1 8.0319 -1.8214 1.7696 15 9 7.0919 -0.0105 1.5717 16 6 7.5106 -1.4651 -0.3159 17 6 6.1077 -1.7510 -0.9079 18 1 5.5384 -0.8273 -1.0118 19 6 6.2256 -2.4686 -2.2541 20 8 7.1285 -3.5691 -2.1296 21 1 -0.4850 0.8401 0.0041 22 1 3.8711 -0.6781 -0.9024 23 1 3.8786 -0.6825 0.8775 24 1 3.5841 -3.1803 0.8190 25 1 3.7359 -3.1189 -0.9534 26 1 5.1479 -1.4229 1.8042 27 1 6.0547 -2.9267 2.1235 28 1 7.9100 -0.5285 -0.7050 29 1 8.1916 -2.2910 -0.5214 30 1 5.2450 -2.8355 -2.5573 31 1 6.6014 -1.7734 -3.0048 32 1 7.2516 -4.0712 -2.9469 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308186435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -96.215327 kcal Electronic energy + Delta-G solvation = -15474.774726 eV Core-core repulsion = 12770.654572 eV Total energy + Delta-G solvation = -2704.120154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.42170 -38.96656 -36.10764 -33.45493 -31.77405 -29.84916 -28.69647 -25.22644 -24.00477 -21.71428 -20.76777 -18.91989 -17.52748 -16.90047 -16.38234 -15.73770 -14.76865 -14.62260 -14.40746 -13.79919 -13.58550 -13.48568 -13.07731 -12.82601 -12.39869 -11.78502 -11.63791 -11.17303 -11.00106 -10.82119 -10.64361 -10.38691 -10.35012 -9.88838 -9.82807 -9.72496 -9.26729 -8.57898 -7.80128 -6.09622 -4.08291 3.26429 3.35164 3.40620 4.27877 4.40790 4.41669 4.56563 4.68467 4.92521 5.18796 5.22875 5.37005 5.49035 5.58206 5.76855 5.89655 5.93354 5.95746 6.10258 6.16278 6.38599 6.40666 6.65918 7.02988 7.13188 7.41261 7.45544 7.77352 7.81693 8.47161 8.94668 9.52710 11.03449 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029439 B = 0.010087 C = 0.008802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.878696 B = 2775.128936 C = 3180.235080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.048 4.048 10 C 0.054 3.946 11 N -0.503 5.503 12 C 0.004 3.996 13 C 0.077 3.923 14 H 0.090 0.910 15 F -0.213 7.213 16 C -0.138 4.138 17 C 0.051 3.949 18 H 0.083 0.917 19 C 0.095 3.905 20 O -0.560 6.560 21 H 0.263 0.737 22 H 0.013 0.987 23 H 0.020 0.980 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.220 -3.651 -2.258 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.086 4.086 10 C -0.073 4.073 11 N -0.227 5.227 12 C -0.125 4.125 13 C 0.040 3.960 14 H 0.108 0.892 15 F -0.194 7.194 16 C -0.176 4.176 17 C -0.057 4.057 18 H 0.100 0.900 19 C 0.017 3.983 20 O -0.364 6.364 21 H 0.073 0.927 22 H 0.031 0.969 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 15.242 -3.836 -1.687 15.808 hybrid contribution -0.189 1.724 -0.456 1.793 sum 15.054 -2.112 -2.143 15.351 Atomic orbital electron populations 1.69913 1.06260 1.26938 1.50830 1.25022 0.94716 0.99107 0.94429 0.86839 0.80582 0.83777 0.78570 1.20267 1.21210 1.18901 1.21004 0.89034 0.94555 1.51140 0.90852 1.20194 0.98113 0.93948 0.96319 1.22299 0.84422 0.98518 1.02085 1.65104 1.10265 1.46573 1.00738 1.23524 0.95600 0.99186 0.94183 1.22425 0.99169 0.77526 0.96897 0.89210 1.92830 1.97194 1.36492 1.92900 1.23041 0.98243 1.03090 0.93273 1.23011 0.94645 0.95561 0.92529 0.89967 1.21952 0.92840 0.87983 0.95543 1.86538 1.66409 1.45154 1.38276 0.92672 0.96857 0.96214 0.90988 0.91153 0.90938 0.89496 0.90522 0.88212 0.92976 0.93761 0.78492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.05 -1.13 3.18 -27.88 -0.09 -1.22 16 10 C 0.05 1.10 5.25 -3.82 -0.02 1.08 16 11 N -0.50 -8.92 5.20 -222.62 -1.16 -10.08 16 12 C 0.00 0.06 6.32 -2.76 -0.02 0.04 16 13 C 0.08 1.14 4.77 -25.38 -0.12 1.01 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 15 F -0.21 -3.69 17.09 2.25 0.04 -3.65 16 16 C -0.14 -1.96 6.23 -24.87 -0.16 -2.12 16 17 C 0.05 0.83 2.50 -65.78 -0.16 0.67 16 18 H 0.08 1.52 5.49 -51.93 -0.29 1.23 16 19 C 0.10 1.32 6.96 37.16 0.26 1.57 16 20 O -0.56 -7.19 12.36 -35.23 -0.44 -7.63 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.01 0.32 5.69 -51.93 -0.30 0.02 16 23 H 0.02 0.49 5.18 -51.93 -0.27 0.22 16 24 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 25 H 0.07 1.41 7.51 -51.92 -0.39 1.02 16 26 H 0.07 1.38 5.69 -51.93 -0.30 1.08 16 27 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 28 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 29 H 0.10 1.34 7.00 -51.93 -0.36 0.98 16 30 H 0.05 0.76 7.45 -51.93 -0.39 0.37 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.37 2.99 9.12 45.56 0.42 3.40 16 LS Contribution 257.28 15.07 3.88 3.88 Total: -1.00 -32.06 257.28 -5.88 -37.94 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.57 Total: 1.36 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -0.74 Total: -12.14 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.38 Total: -37.15 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.44 Total: -7.63 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.06 -5.88 -37.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.274 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds