Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32567 * 120.00340 * 2 1 4 4 C 1.47806 * 120.00099 * 172.97500 * 3 2 1 5 5 C 1.39532 * 120.14490 * 319.18396 * 4 3 2 6 6 C 1.37972 * 119.85881 * 179.71952 * 5 4 3 7 7 C 1.38346 * 120.13705 * 0.53642 * 6 5 4 8 8 C 1.38340 * 120.29099 * 359.76448 * 7 6 5 9 9 C 1.37975 * 120.14065 * 359.95155 * 8 7 6 10 10 C 1.50706 * 119.99769 * 180.02562 * 2 1 3 11 11 N 1.46502 * 109.46681 * 278.46537 * 10 2 1 12 12 C 1.36939 * 119.99581 * 180.02562 * 11 10 2 13 13 H 1.07992 * 120.00262 * 0.02562 * 12 11 10 14 14 C 1.38823 * 119.99869 * 180.02562 * 12 11 10 15 15 N 1.31615 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99792 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47140 * 90.00549 * 16 14 12 18 18 H 1.48498 * 109.47101 * 209.99843 * 16 14 12 19 19 H 1.48502 * 109.47665 * 330.00243 * 16 14 12 20 20 H 1.09000 * 109.47514 * 269.99537 * 1 2 3 21 21 H 1.08998 * 109.47060 * 30.00438 * 1 2 3 22 22 H 1.09001 * 109.47347 * 149.99702 * 1 2 3 23 23 H 1.08000 * 119.99289 * 352.98219 * 3 2 1 24 24 H 1.08005 * 120.06900 * 359.97438 * 5 4 3 25 25 H 1.07997 * 119.93012 * 180.27587 * 6 5 4 26 26 H 1.08002 * 119.85172 * 179.73974 * 7 6 5 27 27 H 1.07999 * 119.93413 * 179.97438 * 8 7 6 28 28 H 1.07997 * 120.07324 * 180.02562 * 9 8 7 29 29 H 1.08995 * 109.47780 * 38.47064 * 10 2 1 30 30 H 1.09001 * 109.46736 * 158.47619 * 10 2 1 31 31 H 0.96999 * 120.00527 * 0.02562 * 11 10 2 32 32 H 0.97007 * 119.99481 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 3.6396 1.1528 0.1566 5 6 4.2498 0.2918 1.0694 6 6 5.6227 0.2970 1.2066 7 6 6.3931 1.1614 0.4494 8 6 5.7938 2.0219 -0.4529 9 6 4.4224 2.0224 -0.6038 10 6 2.2604 -1.3052 -0.0006 11 7 2.3284 -1.8303 1.3654 12 6 2.9701 -3.0145 1.6125 13 1 3.4263 -3.5611 0.8005 14 6 3.0341 -3.5124 2.9067 15 7 2.4776 -2.8465 3.8962 16 14 3.9088 -5.1282 3.2436 17 1 5.3397 -4.8640 3.5400 18 1 3.2778 -5.7992 4.4084 19 1 3.8043 -6.0059 2.0503 20 1 -0.3634 -0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5139 23 1 1.6358 2.0798 -0.1143 24 1 3.6490 -0.3803 1.6643 25 1 6.0965 -0.3720 1.9095 26 1 7.4671 1.1646 0.5635 27 1 6.4008 2.6946 -1.0408 28 1 3.9557 2.6944 -1.3088 29 1 1.7454 -2.0219 -0.6402 30 1 3.2700 -1.1416 -0.3776 31 1 1.9190 -1.3392 2.0948 32 1 2.5220 -3.1946 4.8006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308495396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = 49.738906 kcal Electronic energy + Delta-G solvation = -14142.698261 eV Core-core repulsion = 11875.676383 eV Total energy + Delta-G solvation = -2267.021879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.90455 -36.16559 -33.54205 -30.94983 -30.38609 -30.10717 -26.28866 -25.54105 -22.61254 -21.88960 -21.33226 -18.06186 -17.11810 -16.01414 -14.97602 -14.71706 -14.53380 -13.79015 -13.57485 -13.37030 -12.89160 -12.67882 -12.46656 -12.07814 -11.79179 -11.65674 -11.10563 -10.82605 -10.73952 -10.41781 -10.25893 -9.98054 -9.79602 -9.11045 -8.87979 -8.34708 -7.65990 -6.92912 -5.79421 -3.09093 1.53168 1.97622 2.79224 3.42471 3.48436 3.49627 4.38273 4.59820 5.17236 5.34320 5.41183 5.47215 5.52176 5.67287 5.71104 5.93926 5.97044 6.05985 6.16134 6.22845 6.33235 6.48691 6.55140 6.66558 6.70837 6.86772 7.02361 7.17822 7.24231 7.41768 7.63055 7.70095 8.38372 9.50239 10.04273 10.40709 11.42524 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.009844 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.823473 B = 2843.754233 C = 3700.723746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.135 4.135 4 C -0.058 4.058 5 C -0.097 4.097 6 C -0.121 4.121 7 C -0.129 4.129 8 C -0.139 4.139 9 C -0.120 4.120 10 C 0.174 3.826 11 N -0.719 5.719 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.010 4.010 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.282 1.282 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.170 0.830 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.386 0.614 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 8.773 -7.653 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.154 4.154 4 C -0.058 4.058 5 C -0.115 4.115 6 C -0.139 4.139 7 C -0.147 4.147 8 C -0.157 4.157 9 C -0.138 4.138 10 C 0.048 3.952 11 N -0.364 5.364 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 H 0.090 0.910 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.130 0.870 24 H 0.187 0.813 25 H 0.138 0.862 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.220 0.780 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.761 8.587 -7.677 11.652 hybrid contribution 0.419 -0.708 0.435 0.931 sum 2.180 7.879 -7.241 10.921 Atomic orbital electron populations 1.20779 0.92134 1.01618 1.02312 1.22403 0.95647 0.95528 0.97027 1.21382 0.92098 0.97109 1.04790 1.19081 0.93050 0.96666 0.97034 1.22760 0.95642 0.96294 0.96805 1.21199 0.94467 0.98671 0.99601 1.21153 0.99264 0.97000 0.97284 1.20877 0.94702 1.00213 0.99872 1.21147 0.93693 0.99285 0.99647 1.19939 0.96516 0.89620 0.89157 1.42488 1.66548 1.24808 1.02542 1.19232 1.27440 0.97745 0.92916 0.91107 1.24732 1.01228 0.98955 0.95727 1.69661 1.49163 1.39541 0.99522 0.86207 0.79174 0.83490 0.77430 1.21662 1.21783 1.20768 0.90951 0.92557 0.91874 0.87006 0.81330 0.86247 0.87043 0.87009 0.86887 0.95704 0.94634 0.77987 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.04 36.00 0.36 -1.31 16 2 C -0.11 -1.86 5.35 -101.26 -0.54 -2.40 16 3 C -0.13 -2.24 9.38 -37.58 -0.35 -2.60 16 4 C -0.06 -1.04 4.99 -105.02 -0.52 -1.56 16 5 C -0.10 -1.94 7.60 -39.20 -0.30 -2.24 16 6 C -0.12 -2.23 10.03 -39.64 -0.40 -2.63 16 7 C -0.13 -2.03 10.04 -39.50 -0.40 -2.42 16 8 C -0.14 -2.04 10.03 -39.64 -0.40 -2.44 16 9 C -0.12 -1.86 9.79 -39.19 -0.38 -2.24 16 10 C 0.17 3.64 5.35 -5.19 -0.03 3.61 16 11 N -0.72 -17.78 3.41 -61.08 -0.21 -17.99 16 12 C -0.24 -6.63 9.98 -15.05 -0.15 -6.78 16 13 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 14 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 15 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 16 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.06 0.69 8.05 -51.93 -0.42 0.28 16 22 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 23 H 0.11 1.58 8.04 -52.49 -0.42 1.16 16 24 H 0.17 3.90 4.60 -52.48 -0.24 3.65 16 25 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.78 5.85 -51.93 -0.30 0.48 16 31 H 0.39 10.09 7.39 -40.82 -0.30 9.79 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 272.11 15.07 4.10 4.10 Total: -1.00 -29.02 272.11 -7.80 -36.82 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.19 Total: 10.07 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.20 Total: -23.40 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.52 Total: -44.75 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.02 -7.80 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308495396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.560 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds