Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32567 * 120.00340 * 2 1 4 4 C 1.47806 * 120.00099 * 172.97500 * 3 2 1 5 5 C 1.39532 * 120.14490 * 319.18396 * 4 3 2 6 6 C 1.37972 * 119.85881 * 179.71952 * 5 4 3 7 7 C 1.38346 * 120.13705 * 0.53642 * 6 5 4 8 8 C 1.38340 * 120.29099 * 359.76448 * 7 6 5 9 9 C 1.37975 * 120.14065 * 359.95155 * 8 7 6 10 10 C 1.50706 * 119.99769 * 180.02562 * 2 1 3 11 11 N 1.46502 * 109.46681 * 278.46537 * 10 2 1 12 12 C 1.36939 * 119.99581 * 180.02562 * 11 10 2 13 13 H 1.07992 * 120.00262 * 0.02562 * 12 11 10 14 14 C 1.38823 * 119.99869 * 180.02562 * 12 11 10 15 15 N 1.31615 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99792 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47140 * 90.00549 * 16 14 12 18 18 H 1.48498 * 109.47101 * 209.99843 * 16 14 12 19 19 H 1.48502 * 109.47665 * 330.00243 * 16 14 12 20 20 H 1.09000 * 109.47514 * 269.99537 * 1 2 3 21 21 H 1.08998 * 109.47060 * 30.00438 * 1 2 3 22 22 H 1.09001 * 109.47347 * 149.99702 * 1 2 3 23 23 H 1.08000 * 119.99289 * 352.98219 * 3 2 1 24 24 H 1.08005 * 120.06900 * 359.97438 * 5 4 3 25 25 H 1.07997 * 119.93012 * 180.27587 * 6 5 4 26 26 H 1.08002 * 119.85172 * 179.73974 * 7 6 5 27 27 H 1.07999 * 119.93413 * 179.97438 * 8 7 6 28 28 H 1.07997 * 120.07324 * 180.02562 * 9 8 7 29 29 H 1.08995 * 109.47780 * 38.47064 * 10 2 1 30 30 H 1.09001 * 109.46736 * 158.47619 * 10 2 1 31 31 H 0.96999 * 120.00527 * 0.02562 * 11 10 2 32 32 H 0.97007 * 119.99481 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 3.6396 1.1528 0.1566 5 6 4.2498 0.2918 1.0694 6 6 5.6227 0.2970 1.2066 7 6 6.3931 1.1614 0.4494 8 6 5.7938 2.0219 -0.4529 9 6 4.4224 2.0224 -0.6038 10 6 2.2604 -1.3052 -0.0006 11 7 2.3284 -1.8303 1.3654 12 6 2.9701 -3.0145 1.6125 13 1 3.4263 -3.5611 0.8005 14 6 3.0341 -3.5124 2.9067 15 7 2.4776 -2.8465 3.8962 16 14 3.9088 -5.1282 3.2436 17 1 5.3397 -4.8640 3.5400 18 1 3.2778 -5.7992 4.4084 19 1 3.8043 -6.0059 2.0503 20 1 -0.3634 -0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5139 23 1 1.6358 2.0798 -0.1143 24 1 3.6490 -0.3803 1.6643 25 1 6.0965 -0.3720 1.9095 26 1 7.4671 1.1646 0.5635 27 1 6.4008 2.6946 -1.0408 28 1 3.9557 2.6944 -1.3088 29 1 1.7454 -2.0219 -0.6402 30 1 3.2700 -1.1416 -0.3776 31 1 1.9190 -1.3392 2.0948 32 1 2.5220 -3.1946 4.8006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308495396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = 34.259257 kcal Electronic energy + Delta-G solvation = -14143.369509 eV Core-core repulsion = 11875.676383 eV Total energy + Delta-G solvation = -2267.693127 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24371 -37.67732 -35.37327 -32.72584 -31.74277 -31.55035 -27.71529 -27.23109 -24.54443 -23.22614 -22.65155 -19.72376 -18.84792 -17.43501 -16.68797 -16.19370 -16.04617 -15.34347 -15.27422 -14.96060 -14.33027 -14.13134 -13.85427 -13.33169 -13.27750 -13.05446 -12.95871 -12.75728 -12.26874 -12.04119 -11.91089 -11.69864 -11.49440 -10.95983 -10.42687 -9.67739 -9.04532 -8.92169 -7.95608 -5.24659 0.21345 0.65848 1.43683 1.46644 1.48353 1.55720 2.55773 3.06432 3.37665 3.90130 4.06352 4.19097 4.20478 4.23862 4.37991 4.47666 4.67299 4.78328 4.85775 4.87974 4.96793 5.05727 5.14323 5.21760 5.37466 5.48402 5.54896 5.70376 5.77460 5.87588 6.07893 6.24748 6.29098 7.32276 8.02890 8.30136 9.26732 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.009844 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.823473 B = 2843.754233 C = 3700.723746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.076 4.076 5 C -0.129 4.129 6 C -0.146 4.146 7 C -0.125 4.125 8 C -0.131 4.131 9 C -0.114 4.114 10 C 0.178 3.822 11 N -0.723 5.723 12 C -0.243 4.243 13 H 0.070 0.930 14 C -0.067 4.067 15 N -0.964 5.964 16 Si 0.968 3.032 17 H -0.288 1.288 18 H -0.294 1.294 19 H -0.272 1.272 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.146 0.854 24 H 0.133 0.867 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.375 0.625 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 10.414 -9.480 14.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.147 4.147 6 C -0.164 4.164 7 C -0.143 4.143 8 C -0.149 4.149 9 C -0.132 4.132 10 C 0.053 3.947 11 N -0.366 5.366 12 C -0.375 4.375 13 H 0.088 0.912 14 C -0.260 4.260 15 N -0.614 5.614 16 Si 0.798 3.202 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.197 1.197 20 H 0.081 0.919 21 H 0.108 0.892 22 H 0.079 0.921 23 H 0.164 0.836 24 H 0.150 0.850 25 H 0.124 0.876 26 H 0.157 0.843 27 H 0.170 0.830 28 H 0.165 0.835 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.208 0.792 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.400 10.230 -9.544 14.195 hybrid contribution 0.313 -1.122 0.927 1.488 sum 2.713 9.108 -8.617 12.828 Atomic orbital electron populations 1.20751 0.90123 1.03182 1.02124 1.22357 0.96952 0.94113 0.99132 1.21700 0.91736 0.97980 1.02517 1.19283 0.94053 0.97045 0.97261 1.22488 0.96197 0.97567 0.98454 1.21238 0.94350 1.00025 1.00796 1.21458 1.00533 0.95925 0.96417 1.21363 0.94880 0.99642 0.98974 1.21542 0.94097 0.98487 0.99052 1.19932 0.96445 0.91452 0.86911 1.42553 1.66078 1.24057 1.03918 1.19529 1.26695 0.98314 0.92942 0.91193 1.25469 1.02637 1.02238 0.95636 1.69809 1.50966 1.41109 0.99562 0.85220 0.77883 0.79901 0.77246 1.21477 1.22043 1.19678 0.91921 0.89215 0.92127 0.83632 0.85004 0.87617 0.84260 0.82996 0.83537 0.96145 0.95728 0.79177 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 10.04 71.23 0.72 -2.29 16 2 C -0.13 -4.33 5.35 -17.60 -0.09 -4.43 16 3 C -0.12 -3.79 9.38 23.65 0.22 -3.57 16 4 C -0.08 -2.63 4.99 -20.12 -0.10 -2.73 16 5 C -0.13 -5.29 7.60 22.52 0.17 -5.12 16 6 C -0.15 -5.47 10.03 22.23 0.22 -5.24 16 7 C -0.13 -3.68 10.04 22.32 0.22 -3.45 16 8 C -0.13 -3.34 10.03 22.23 0.22 -3.12 16 9 C -0.11 -3.14 9.79 22.52 0.22 -2.92 16 10 C 0.18 7.63 5.35 85.63 0.46 8.09 16 11 N -0.72 -37.18 3.41 -347.16 -1.18 -38.36 16 12 C -0.24 -13.71 9.98 84.04 0.84 -12.87 16 13 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 14 C -0.07 -3.86 5.50 84.87 0.47 -3.40 16 15 N -0.96 -58.88 13.06 21.65 0.28 -58.59 16 16 Si 0.97 46.60 29.55 68.60 2.03 48.62 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 18 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 22 H 0.06 1.73 8.12 -2.39 -0.02 1.71 16 23 H 0.15 3.56 8.04 -2.91 -0.02 3.54 16 24 H 0.13 6.45 4.60 -2.91 -0.01 6.43 16 25 H 0.11 4.07 8.06 -2.91 -0.02 4.04 16 26 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.02 1.12 5.85 -2.39 -0.01 1.10 16 31 H 0.38 20.61 7.39 -92.71 -0.69 19.93 16 32 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -64.34 272.11 5.11 -59.23 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.42 Total: 30.15 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.57 Total: -41.05 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -0.90 Total: -96.95 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -64.34 5.11 -59.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308495396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.489 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds