Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32568 * 119.99688 * 2 1 4 4 C 1.47809 * 120.00184 * 352.62450 * 3 2 1 5 5 C 1.39539 * 120.14351 * 322.43293 * 4 3 2 6 6 C 1.37967 * 119.85542 * 179.71761 * 5 4 3 7 7 C 1.38342 * 120.14121 * 0.53800 * 6 5 4 8 8 C 1.38340 * 120.28864 * 359.75815 * 7 6 5 9 9 C 1.37971 * 120.14320 * 359.96176 * 8 7 6 10 10 C 1.50694 * 119.99871 * 179.72115 * 2 1 3 11 11 N 1.46501 * 109.47232 * 274.99770 * 10 2 1 12 12 C 1.36940 * 120.00056 * 180.02562 * 11 10 2 13 13 H 1.08006 * 119.99850 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00053 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47441 * 59.99969 * 16 14 12 18 18 H 1.48501 * 109.46823 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47094 * 299.99435 * 16 14 12 20 20 H 1.08999 * 109.47512 * 88.57779 * 1 2 3 21 21 H 1.09003 * 109.47349 * 208.57898 * 1 2 3 22 22 H 1.09000 * 109.47366 * 328.57643 * 1 2 3 23 23 H 1.08005 * 119.99909 * 172.62803 * 3 2 1 24 24 H 1.08004 * 120.06930 * 359.97314 * 5 4 3 25 25 H 1.08003 * 119.92894 * 180.27333 * 6 5 4 26 26 H 1.08002 * 119.85728 * 179.74422 * 7 6 5 27 27 H 1.08002 * 119.92985 * 179.97438 * 8 7 6 28 28 H 1.07994 * 120.07372 * 180.02562 * 9 8 7 29 29 H 1.09000 * 109.47195 * 35.00369 * 10 2 1 30 30 H 1.09004 * 109.46930 * 155.00103 * 10 2 1 31 31 H 0.96993 * 119.99922 * 0.02562 * 11 10 2 32 32 H 0.97000 * 120.00179 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1697 1.1481 0.0000 4 6 1.4398 2.4229 -0.1643 5 6 0.3507 2.4997 -1.0332 6 6 -0.3299 3.6911 -1.1777 7 6 0.0721 4.8108 -0.4717 8 6 1.1549 4.7429 0.3867 9 6 1.8405 3.5561 0.5445 10 6 2.2604 -1.3051 0.0064 11 7 2.4004 -1.7815 1.3847 12 6 3.0551 -2.9568 1.6397 13 1 3.4687 -3.5325 0.8247 14 6 3.1873 -3.4085 2.9456 15 7 2.6837 -2.7068 3.9387 16 14 4.0810 -5.0115 3.2935 17 1 5.4797 -4.9148 2.8041 18 1 4.0855 -5.2683 4.7561 19 1 3.3887 -6.1255 2.5970 20 1 -0.3634 0.0255 -1.0273 21 1 -0.3634 -0.9025 0.4916 22 1 -0.3634 0.8769 0.5358 23 1 3.2431 1.1520 0.1200 24 1 0.0387 1.6274 -1.5884 25 1 -1.1758 3.7508 -1.8465 26 1 -0.4615 5.7422 -0.5914 27 1 1.4640 5.6207 0.9347 28 1 2.6853 3.5042 1.2152 29 1 1.7131 -2.0435 -0.5796 30 1 3.2487 -1.1561 -0.4287 31 1 2.0293 -1.2643 2.1165 32 1 2.7764 -3.0222 4.8513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308495397.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = 27.990396 kcal Electronic energy + Delta-G solvation = -13565.158848 eV Core-core repulsion = 11297.193883 eV Total energy + Delta-G solvation = -2267.964965 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24027 -37.72101 -35.50478 -32.99099 -31.92467 -30.93825 -28.30781 -27.15048 -24.61813 -23.24872 -22.57228 -19.81142 -18.88818 -17.39674 -16.75782 -16.35774 -16.12631 -15.38624 -15.28522 -14.91239 -14.56509 -14.32950 -13.83820 -13.45206 -13.28156 -13.00237 -12.75761 -12.65541 -12.46663 -12.17792 -11.93634 -11.82836 -11.52410 -10.97786 -10.50563 -9.77222 -9.04300 -9.02734 -7.96287 -5.26965 0.13967 0.56173 1.41644 1.47867 1.50476 1.57043 2.56541 2.99633 3.36487 3.78813 4.02342 4.11612 4.17985 4.22306 4.25828 4.35079 4.61437 4.68202 4.76958 4.83277 4.90677 4.96041 5.09529 5.15229 5.24391 5.45850 5.49227 5.61766 5.66216 5.79388 5.99594 6.16960 6.24486 7.30817 8.04176 8.29791 9.26957 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.059447 B = 0.005326 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.898699 B = 5255.971529 C = 5457.795665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.129 4.129 4 C -0.063 4.063 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.127 4.127 8 C -0.126 4.126 9 C -0.131 4.131 10 C 0.183 3.817 11 N -0.740 5.740 12 C -0.252 4.252 13 H 0.077 0.923 14 C -0.074 4.074 15 N -0.971 5.971 16 Si 0.978 3.022 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.276 1.276 20 H 0.092 0.908 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.135 0.865 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.119 0.881 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.373 0.627 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 13.962 -10.588 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.148 4.148 4 C -0.063 4.063 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.149 4.149 10 C 0.057 3.943 11 N -0.383 5.383 12 C -0.384 4.384 13 H 0.095 0.905 14 C -0.266 4.266 15 N -0.621 5.621 16 Si 0.806 3.194 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.202 1.202 20 H 0.110 0.890 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.127 0.873 24 H 0.153 0.847 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.159 0.841 28 H 0.137 0.863 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.205 0.795 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.772 13.795 -10.647 18.357 hybrid contribution 0.651 -0.865 0.864 1.385 sum -5.121 12.930 -9.783 17.003 Atomic orbital electron populations 1.20991 0.90940 1.01947 1.02642 1.22252 0.96748 0.93897 0.98285 1.21548 0.98933 0.91232 1.03125 1.19133 0.96330 0.93040 0.97760 1.21685 0.94912 0.99196 0.98215 1.21422 1.00369 0.92383 1.00105 1.21550 0.96939 0.99505 0.96468 1.21360 0.96226 0.97655 0.99173 1.21471 1.00794 0.93029 0.99596 1.19841 0.96106 0.91679 0.86662 1.42542 1.67759 1.25041 1.02924 1.19662 1.27437 0.98699 0.92567 0.90485 1.25624 1.02882 1.02687 0.95423 1.69833 1.52211 1.41235 0.98824 0.85150 0.78548 0.79332 0.76346 1.20295 1.21997 1.20153 0.89000 0.93179 0.91416 0.87324 0.84725 0.83519 0.83506 0.84080 0.86256 0.95025 0.95780 0.79499 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.32 8.26 71.23 0.59 -2.73 16 2 C -0.11 -3.97 5.35 -17.60 -0.09 -4.06 16 3 C -0.13 -4.34 9.37 23.65 0.22 -4.12 16 4 C -0.06 -1.81 5.09 -20.12 -0.10 -1.91 16 5 C -0.12 -2.97 7.76 22.52 0.17 -2.79 16 6 C -0.13 -2.46 10.03 22.23 0.22 -2.24 16 7 C -0.13 -2.37 10.04 22.32 0.22 -2.14 16 8 C -0.13 -2.69 10.03 22.23 0.22 -2.46 16 9 C -0.13 -3.48 9.79 22.52 0.22 -3.26 16 10 C 0.18 7.81 6.41 85.63 0.55 8.36 16 11 N -0.74 -39.62 5.59 -347.17 -1.94 -41.57 16 12 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 13 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 14 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 15 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 16 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H 0.09 2.22 6.63 -2.39 -0.02 2.20 16 21 H 0.05 1.69 8.11 -2.39 -0.02 1.67 16 22 H 0.07 2.00 6.49 -2.39 -0.02 1.99 16 23 H 0.11 3.80 8.05 -2.91 -0.02 3.77 16 24 H 0.14 2.98 5.58 -2.91 -0.02 2.97 16 25 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 26 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16 31 H 0.37 21.44 7.66 -92.71 -0.71 20.73 16 32 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -66.46 274.23 4.30 -62.16 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.39 Total: 26.19 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.53 Total: -34.96 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -1.66 Total: -102.24 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -66.46 4.30 -62.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308495397.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.155 kcal (2) G-P(sol) polarization free energy of solvation -66.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds