Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47330 * 269.99738 * 3 2 1 5 5 H 1.48501 * 109.46943 * 29.99633 * 3 2 1 6 6 H 1.48497 * 109.47243 * 149.99887 * 3 2 1 7 7 C 1.38811 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99596 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00348 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00457 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47311 * 179.97438 * 10 9 7 12 12 H 1.08999 * 115.55264 * 330.66789 * 11 10 9 13 13 C 1.53077 * 117.53146 * 116.38710 * 11 10 9 14 14 C 1.52999 * 59.98398 * 107.46671 * 13 11 10 15 15 H 1.08996 * 117.49726 * 107.50219 * 14 13 11 16 16 C 1.50701 * 117.49842 * 252.49538 * 14 13 11 17 17 C 1.38232 * 119.99865 * 8.61524 * 16 14 13 18 18 C 1.38243 * 120.00069 * 179.97438 * 17 16 14 19 19 C 1.38235 * 119.99602 * 0.09581 * 18 17 16 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00279 * 188.75058 * 16 14 13 22 22 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99712 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.47289 * 59.99920 * 10 9 7 25 25 H 1.09005 * 109.47153 * 300.00193 * 10 9 7 26 26 H 1.08997 * 117.51034 * 359.97438 * 13 11 10 27 27 H 1.09001 * 117.49561 * 214.95846 * 13 11 10 28 28 H 1.08001 * 120.00365 * 0.08909 * 17 16 14 29 29 H 1.08000 * 119.99728 * 180.36512 * 18 17 16 30 30 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 32 32 H 1.08008 * 119.99453 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.1064 -4.6196 0.4833 13 6 1.0629 -5.7503 -1.2133 14 6 1.6323 -6.2351 0.1215 15 1 1.0491 -6.9661 0.6816 16 6 3.1287 -6.3772 0.2292 17 6 3.9423 -5.9079 -0.7850 18 6 5.3150 -6.0377 -0.6860 19 6 5.8739 -6.6387 0.4264 20 6 5.0603 -7.1093 1.4399 21 6 3.6876 -6.9793 1.3409 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3880 -0.0002 24 1 2.6840 -3.7142 0.8922 25 1 2.6854 -3.7150 -0.8878 26 1 1.7706 -5.5339 -2.0136 27 1 0.1050 -6.1620 -1.5312 28 1 3.5056 -5.4381 -1.6539 29 1 5.9509 -5.6657 -1.4757 30 1 6.9463 -6.7405 0.5035 31 1 5.4969 -7.5792 2.3088 32 1 3.0518 -7.3476 2.1325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308512438.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = 57.441819 kcal Electronic energy + Delta-G solvation = -13808.232431 eV Core-core repulsion = 11541.544575 eV Total energy + Delta-G solvation = -2266.687855 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60623 -37.01774 -34.02201 -31.03833 -30.72377 -30.12185 -26.01247 -23.63752 -22.61902 -22.44342 -20.55734 -19.60853 -17.12012 -16.54574 -15.60576 -14.87251 -14.57919 -14.15344 -13.76894 -13.25493 -13.18639 -12.79857 -12.64784 -12.57170 -11.77631 -11.20614 -10.95284 -10.82100 -10.78948 -10.46840 -10.32105 -10.01225 -9.73848 -9.64297 -8.81230 -8.74393 -8.30837 -6.86050 -5.72453 -3.00442 1.48736 1.55732 3.46301 3.51122 3.53202 3.78662 4.32959 4.62633 4.78182 4.99770 5.08702 5.14961 5.24651 5.27842 5.41245 5.60951 5.63415 5.74834 5.93545 6.02551 6.15678 6.19932 6.26707 6.33090 6.40366 6.61824 6.65456 6.82650 6.85361 6.92682 7.15508 7.74205 8.46955 9.57774 10.16758 10.51836 11.50749 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033675 B = 0.006788 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.287263 B = 4124.109974 C = 4633.811682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.183 3.817 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.172 4.172 14 C -0.125 4.125 15 H 0.108 0.892 16 C -0.038 4.038 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.117 4.117 22 H 0.255 0.745 23 H 0.384 0.616 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -15.269 0.028 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.056 3.944 11 C -0.149 4.149 12 H 0.126 0.874 13 C -0.209 4.209 14 C -0.144 4.144 15 H 0.127 0.873 16 C -0.038 4.038 17 C -0.132 4.132 18 C -0.135 4.135 19 C -0.149 4.149 20 C -0.139 4.139 21 C -0.136 4.136 22 H 0.064 0.936 23 H 0.217 0.783 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.202 -15.141 0.038 16.766 hybrid contribution 0.120 0.958 0.042 0.967 sum 7.322 -14.182 0.080 15.961 Atomic orbital electron populations 1.69666 1.05102 1.25575 1.58008 1.24733 0.95531 0.97648 1.03179 0.86187 0.78667 0.83846 0.77511 1.21731 1.21753 1.20766 1.19241 0.91043 0.84185 1.42360 0.91241 1.42363 1.05867 0.99902 1.89388 1.20255 0.92128 0.84134 0.97861 1.22740 1.01192 0.90197 1.00722 0.87361 1.23182 1.02218 1.04067 0.91397 1.21161 0.91817 0.99138 1.02249 0.87348 1.19137 0.93504 0.97010 0.94147 1.21162 0.93483 0.99388 0.99145 1.21116 0.94994 0.99244 0.98188 1.21074 0.99470 0.99819 0.94585 1.21055 0.93651 1.00494 0.98743 1.20927 0.94944 1.00193 0.97488 0.93556 0.78277 0.96022 0.96003 0.88501 0.88813 0.85702 0.86263 0.86522 0.86416 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.06 55.49 0.72 -28.20 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.40 5.60 -59.91 -0.34 -19.73 16 10 C 0.18 3.94 5.20 -4.04 -0.02 3.92 16 11 C -0.13 -2.25 5.85 -90.58 -0.53 -2.78 16 12 H 0.11 1.91 8.04 -51.93 -0.42 1.49 16 13 C -0.17 -2.49 9.52 -26.69 -0.25 -2.74 16 14 C -0.13 -1.79 6.04 -91.77 -0.55 -2.34 16 15 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.04 -0.55 4.96 -104.63 -0.52 -1.07 16 17 C -0.11 -1.66 7.87 -39.58 -0.31 -1.97 16 18 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 19 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 20 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16 21 C -0.12 -1.56 9.74 -39.58 -0.39 -1.94 16 22 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.38 10.59 7.60 -40.82 -0.31 10.28 16 24 H 0.02 0.50 8.02 -51.93 -0.42 0.08 16 25 H 0.02 0.47 6.23 -51.93 -0.32 0.15 16 26 H 0.10 1.39 6.07 -51.93 -0.32 1.08 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.13 1.80 5.21 -52.49 -0.27 1.53 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -31.57 270.17 -8.72 -40.28 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.14 Total: 8.01 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -4.01 Total: -22.33 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.39 Total: -47.93 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.57 -8.72 -40.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308512438.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.726 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds