Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47330 * 269.99738 * 3 2 1 5 5 H 1.48501 * 109.46943 * 29.99633 * 3 2 1 6 6 H 1.48497 * 109.47243 * 149.99887 * 3 2 1 7 7 C 1.38811 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99596 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00348 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00457 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47311 * 179.97438 * 10 9 7 12 12 H 1.08999 * 115.55264 * 330.66789 * 11 10 9 13 13 C 1.53077 * 117.53146 * 116.38710 * 11 10 9 14 14 C 1.52999 * 59.98398 * 107.46671 * 13 11 10 15 15 H 1.08996 * 117.49726 * 107.50219 * 14 13 11 16 16 C 1.50701 * 117.49842 * 252.49538 * 14 13 11 17 17 C 1.38232 * 119.99865 * 8.61524 * 16 14 13 18 18 C 1.38243 * 120.00069 * 179.97438 * 17 16 14 19 19 C 1.38235 * 119.99602 * 0.09581 * 18 17 16 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00279 * 188.75058 * 16 14 13 22 22 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99712 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.47289 * 59.99920 * 10 9 7 25 25 H 1.09005 * 109.47153 * 300.00193 * 10 9 7 26 26 H 1.08997 * 117.51034 * 359.97438 * 13 11 10 27 27 H 1.09001 * 117.49561 * 214.95846 * 13 11 10 28 28 H 1.08001 * 120.00365 * 0.08909 * 17 16 14 29 29 H 1.08000 * 119.99728 * 180.36512 * 18 17 16 30 30 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 32 32 H 1.08008 * 119.99453 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.1064 -4.6196 0.4833 13 6 1.0629 -5.7503 -1.2133 14 6 1.6323 -6.2351 0.1215 15 1 1.0491 -6.9661 0.6816 16 6 3.1287 -6.3772 0.2292 17 6 3.9423 -5.9079 -0.7850 18 6 5.3150 -6.0377 -0.6860 19 6 5.8739 -6.6387 0.4264 20 6 5.0603 -7.1093 1.4399 21 6 3.6876 -6.9793 1.3409 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3880 -0.0002 24 1 2.6840 -3.7142 0.8922 25 1 2.6854 -3.7150 -0.8878 26 1 1.7706 -5.5339 -2.0136 27 1 0.1050 -6.1620 -1.5312 28 1 3.5056 -5.4381 -1.6539 29 1 5.9509 -5.6657 -1.4757 30 1 6.9463 -6.7405 0.5035 31 1 5.4969 -7.5792 2.3088 32 1 3.0518 -7.3476 2.1325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308512438.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = 39.377969 kcal Electronic energy + Delta-G solvation = -13809.015738 eV Core-core repulsion = 11541.544575 eV Total energy + Delta-G solvation = -2267.471163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69940 -38.24634 -36.00691 -32.96749 -31.78801 -31.27392 -27.91773 -24.80024 -24.55800 -23.46505 -21.81884 -20.87203 -19.12462 -17.76101 -16.92452 -16.35238 -15.95128 -15.47206 -15.31319 -14.97067 -14.44854 -14.33652 -14.16625 -13.70181 -13.06825 -12.85669 -12.82136 -12.34600 -12.11778 -11.96365 -11.80262 -11.74648 -11.38676 -11.20166 -10.75412 -9.75949 -9.38344 -9.01576 -7.97754 -5.27190 0.46517 0.55718 1.45203 1.47683 1.56360 2.53052 2.70384 3.18646 3.36108 3.64223 3.76382 3.96596 4.08605 4.18918 4.29168 4.33252 4.39156 4.56879 4.65792 4.77024 4.85106 4.96806 5.05732 5.12438 5.20957 5.23780 5.33671 5.46505 5.63933 5.67232 5.78989 6.17965 6.24892 7.30552 8.06045 8.31079 9.26045 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033675 B = 0.006788 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.287263 B = 4124.109974 C = 4633.811682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.071 0.929 9 N -0.744 5.744 10 C 0.192 3.808 11 C -0.158 4.158 12 H 0.102 0.898 13 C -0.160 4.160 14 C -0.102 4.102 15 H 0.132 0.868 16 C -0.062 4.062 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.133 4.133 20 C -0.125 4.125 21 C -0.127 4.127 22 H 0.253 0.747 23 H 0.374 0.626 24 H 0.007 0.993 25 H 0.021 0.979 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -16.237 0.344 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.387 5.387 10 C 0.066 3.934 11 C -0.176 4.176 12 H 0.120 0.880 13 C -0.197 4.197 14 C -0.120 4.120 15 H 0.150 0.850 16 C -0.062 4.062 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.142 4.142 21 C -0.145 4.145 22 H 0.062 0.938 23 H 0.206 0.794 24 H 0.025 0.975 25 H 0.039 0.961 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.152 0.848 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.538 -16.142 0.351 18.264 hybrid contribution -0.213 1.181 -0.047 1.201 sum 8.326 -14.961 0.304 17.124 Atomic orbital electron populations 1.69822 1.06632 1.26238 1.59269 1.25602 0.96475 1.01163 1.03390 0.85112 0.77669 0.79195 0.77631 1.21072 1.21769 1.19542 1.19619 0.91396 0.85482 1.41723 0.91060 1.42577 1.05639 1.01111 1.89325 1.20216 0.92624 0.83782 0.96795 1.22487 1.00370 0.90541 1.04242 0.88002 1.23273 1.03254 1.02146 0.91022 1.21249 0.92225 0.96764 1.01774 0.85031 1.19300 0.93560 0.98304 0.95022 1.21257 0.94423 1.00188 0.99285 1.21396 0.94715 0.99461 0.99243 1.21454 1.00995 0.98694 0.93946 1.21444 0.93320 0.99888 0.99579 1.21227 0.95947 0.99872 0.97407 0.93827 0.79365 0.97513 0.96073 0.88689 0.86669 0.86536 0.84848 0.83905 0.83675 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 3 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -40.35 5.60 -343.45 -1.92 -42.27 16 10 C 0.19 8.40 5.20 86.38 0.45 8.84 16 11 C -0.16 -5.47 5.85 -10.77 -0.06 -5.53 16 12 H 0.10 3.64 8.04 -2.39 -0.02 3.62 16 13 C -0.16 -4.48 9.52 30.62 0.29 -4.19 16 14 C -0.10 -2.78 6.04 -11.54 -0.07 -2.85 16 15 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 16 C -0.06 -1.73 4.96 -19.87 -0.10 -1.83 16 17 C -0.13 -3.81 7.87 22.27 0.18 -3.64 16 18 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 19 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 20 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 21 C -0.13 -3.10 9.74 22.27 0.22 -2.89 16 22 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.37 21.30 7.60 -92.70 -0.70 20.59 16 24 H 0.01 0.32 8.02 -2.39 -0.02 0.31 16 25 H 0.02 0.93 6.23 -2.38 -0.01 0.92 16 26 H 0.09 2.69 6.07 -2.39 -0.01 2.67 16 27 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.12 3.40 5.21 -2.91 -0.02 3.38 16 29 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -67.36 270.17 3.67 -63.69 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.41 Total: 27.96 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.88 Total: -38.11 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -1.64 Total: -102.82 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -67.36 3.67 -63.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308512438.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.070 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds