Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48492 * 109.47092 * 239.99421 * 3 2 1 5 5 H 1.48504 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46820 * 119.99770 * 3 2 1 7 7 C 1.38813 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00252 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47298 * 179.97438 * 10 9 7 12 12 H 1.08998 * 115.56574 * 29.31409 * 11 10 9 13 13 C 1.53076 * 117.49498 * 243.60144 * 11 10 9 14 14 C 1.52995 * 59.98397 * 252.51799 * 13 11 10 15 15 H 1.09002 * 117.50244 * 107.50520 * 14 13 11 16 16 C 1.50707 * 117.49603 * 252.49762 * 14 13 11 17 17 C 1.38238 * 119.99792 * 188.75047 * 16 14 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 14 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 8.72983 * 16 14 13 22 22 H 0.96998 * 119.99839 * 0.02562 * 1 2 3 23 23 H 0.97007 * 120.00172 * 359.97438 * 9 7 2 24 24 H 1.09010 * 109.46791 * 59.99902 * 10 9 7 25 25 H 1.08998 * 109.47478 * 300.00205 * 10 9 7 26 26 H 1.09002 * 117.51206 * 145.03736 * 13 11 10 27 27 H 1.08996 * 117.49528 * 0.02562 * 13 11 10 28 28 H 1.08005 * 120.00068 * 359.97438 * 17 16 14 29 29 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 30 30 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 31 31 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 32 32 H 1.07999 * 119.99968 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.1062 -4.6201 -0.4799 13 6 1.0638 -5.7489 1.2177 14 6 1.6322 -6.2352 -0.1169 15 1 2.7145 -6.3380 -0.1955 16 6 0.8254 -7.2468 -0.8895 17 6 1.3675 -7.8564 -2.0056 18 6 0.6277 -8.7847 -2.7140 19 6 -0.6539 -9.1039 -2.3060 20 6 -1.1979 -8.4905 -1.1931 21 6 -0.4564 -7.5656 -0.4820 22 1 -0.4850 0.8400 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 2.6847 -3.7145 0.8906 25 1 2.6846 -3.7146 -0.8894 26 1 0.1063 -6.1605 1.5369 27 1 1.7719 -5.5311 2.0172 28 1 2.3690 -7.6073 -2.3241 29 1 1.0510 -9.2606 -3.5861 30 1 -1.2317 -9.8296 -2.8592 31 1 -2.2008 -8.7366 -0.8768 32 1 -0.8796 -7.0899 0.3904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308512440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = 54.902386 kcal Electronic energy + Delta-G solvation = -13445.867701 eV Core-core repulsion = 11179.069727 eV Total energy + Delta-G solvation = -2266.797973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56313 -37.11139 -34.08281 -31.22968 -30.89860 -30.04936 -25.94917 -23.70647 -22.76751 -22.22899 -20.45504 -19.95257 -17.13725 -16.94642 -15.42103 -14.88847 -14.64317 -14.22508 -13.78527 -13.35041 -13.12639 -12.86283 -12.79110 -12.54883 -11.75131 -11.26065 -11.04738 -10.88476 -10.79685 -10.58668 -10.35319 -10.05649 -9.75852 -9.67489 -8.89473 -8.82049 -8.38968 -6.88199 -5.73274 -3.01906 1.37242 1.42966 3.46486 3.50272 3.51750 3.70238 4.29051 4.58327 4.74385 4.90628 4.98939 5.13439 5.17310 5.26430 5.35115 5.52303 5.61340 5.65481 5.91745 5.97540 6.08882 6.13341 6.22483 6.32023 6.39418 6.52353 6.53297 6.72621 6.78358 6.90106 7.03738 7.71982 8.45762 9.56601 10.15228 10.50186 11.49754 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.054803 B = 0.004946 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.794436 B = 5659.800656 C = 5695.272298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.181 3.819 11 C -0.126 4.126 12 H 0.106 0.894 13 C -0.171 4.171 14 C -0.126 4.126 15 H 0.111 0.889 16 C -0.038 4.038 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.122 4.122 22 H 0.256 0.744 23 H 0.384 0.616 24 H 0.021 0.979 25 H 0.023 0.977 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 -17.797 -2.060 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.054 3.946 11 C -0.144 4.144 12 H 0.124 0.876 13 C -0.207 4.207 14 C -0.145 4.145 15 H 0.129 0.871 16 C -0.038 4.038 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.151 4.151 20 C -0.136 4.136 21 C -0.140 4.140 22 H 0.065 0.935 23 H 0.218 0.782 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.300 -17.662 -2.058 17.784 hybrid contribution 0.111 0.908 -0.043 0.915 sum 0.411 -16.754 -2.101 16.890 Atomic orbital electron populations 1.69658 1.05137 1.25752 1.57729 1.24742 0.95526 0.97687 1.03022 0.86249 0.78505 0.83479 0.77851 1.21259 1.21660 1.21255 1.19197 0.91025 0.84177 1.42782 0.91224 1.42339 1.05910 0.99808 1.89437 1.20256 0.92235 0.84359 0.97789 1.22755 1.01422 0.89698 1.00548 0.87620 1.23196 1.02459 1.03843 0.91232 1.21167 0.98608 0.94964 0.99737 0.87079 1.19259 0.94007 0.95620 0.94929 1.20994 1.00262 0.97010 0.95204 1.21102 0.94798 0.98145 0.99702 1.21090 0.95847 1.00672 0.97526 1.21113 0.99624 0.97064 0.95796 1.21124 0.94278 0.98283 1.00333 0.93466 0.78193 0.96084 0.95928 0.88890 0.88403 0.86053 0.86279 0.86449 0.86267 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.28 5.60 -59.91 -0.34 -19.61 16 10 C 0.18 3.81 6.54 -4.05 -0.03 3.78 16 11 C -0.13 -2.18 5.48 -90.58 -0.50 -2.67 16 12 H 0.11 1.95 8.04 -51.93 -0.42 1.54 16 13 C -0.17 -2.47 9.51 -26.69 -0.25 -2.72 16 14 C -0.13 -1.81 5.76 -91.77 -0.53 -2.33 16 15 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 16 C -0.04 -0.52 5.61 -104.62 -0.59 -1.11 16 17 C -0.12 -1.47 9.74 -39.58 -0.39 -1.85 16 18 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 19 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 21 C -0.12 -1.58 9.30 -39.58 -0.37 -1.95 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.38 10.62 7.60 -40.82 -0.31 10.31 16 24 H 0.02 0.44 7.88 -51.92 -0.41 0.04 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 1.22 6.18 -51.93 -0.32 0.90 16 27 H 0.10 1.38 8.03 -51.93 -0.42 0.96 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.50 6.02 -52.49 -0.32 1.19 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -31.29 275.50 -8.84 -40.13 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.27 Total: 7.53 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -4.09 Total: -21.80 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.39 Total: -47.73 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.29 -8.84 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308512440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.034 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds