Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31004 * 120.00128 * 2 1 4 4 C 1.50699 * 119.99872 * 0.02562 * 3 2 1 5 5 N 1.46506 * 109.46848 * 124.99815 * 4 3 2 6 6 C 1.39683 * 119.99792 * 179.97438 * 5 4 3 7 7 C 1.39335 * 119.95193 * 359.72963 * 6 5 4 8 8 C 1.38477 * 120.42267 * 179.71851 * 7 6 5 9 9 C 1.37694 * 120.32435 * 0.55726 * 8 7 6 10 10 C 1.40746 * 119.88934 * 359.72131 * 9 8 7 11 11 C 1.41415 * 120.20518 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00029 * 24.40756 * 11 10 9 13 13 C 1.39929 * 119.99981 * 204.41004 * 11 10 9 14 14 N 1.30822 * 120.00228 * 17.88533 * 13 11 10 15 15 Si 1.86802 * 119.99774 * 197.88554 * 13 11 10 16 16 H 1.48505 * 109.47141 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47293 * 119.99610 * 15 13 11 18 18 H 1.48494 * 109.47276 * 239.99845 * 15 13 11 19 19 C 1.38276 * 119.94963 * 180.02562 * 6 5 4 20 20 H 1.08999 * 109.46963 * 299.72425 * 1 2 3 21 21 H 1.09002 * 109.47260 * 59.71905 * 1 2 3 22 22 H 1.08999 * 109.47251 * 179.72304 * 1 2 3 23 23 H 1.07998 * 119.99990 * 180.27723 * 2 1 3 24 24 H 1.07999 * 120.00061 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47220 * 245.00042 * 4 3 2 26 26 H 1.08997 * 109.47090 * 5.00554 * 4 3 2 27 27 H 0.96999 * 119.99815 * 0.02562 * 5 4 3 28 28 H 1.07999 * 119.78724 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.83889 * 180.27619 * 8 7 6 30 30 H 1.07999 * 120.05361 * 179.74427 * 9 8 7 31 31 H 0.96999 * 120.00019 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.15980 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 7 1.8509 3.2583 1.1321 6 6 1.2915 4.5210 1.3414 7 6 0.3169 5.0032 0.4702 8 6 -0.2484 6.2512 0.6718 9 6 0.1552 7.0345 1.7299 10 6 1.1429 6.5631 2.6149 11 6 1.5619 7.3617 3.7041 12 1 0.9031 8.1185 4.1038 13 6 2.8302 7.1716 4.2639 14 7 3.7512 6.5278 3.5939 15 14 3.2082 7.8370 5.9679 16 1 2.0065 8.5204 6.5103 17 1 3.5861 6.7154 6.8648 18 1 4.3323 8.8037 5.8837 19 6 1.7102 5.2932 2.4094 20 1 -0.3633 0.5095 0.8924 21 1 -0.3634 0.5182 -0.8875 22 1 -0.3634 -1.0276 -0.0050 23 1 2.0470 -0.9353 -0.0045 24 1 3.2420 1.1345 -0.0004 25 1 1.6026 2.9716 -0.9307 26 1 0.3403 2.2424 0.0906 27 1 2.5328 2.9238 1.7355 28 1 -0.0032 4.3978 -0.3649 29 1 -1.0063 6.6138 -0.0068 30 1 -0.2857 8.0088 1.8806 31 1 4.6302 6.3957 3.9822 32 1 2.4687 4.9222 3.0828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313435391.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = 28.521317 kcal Electronic energy + Delta-G solvation = -13734.471685 eV Core-core repulsion = 11466.529743 eV Total energy + Delta-G solvation = -2267.941942 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.91718 -36.24476 -33.96856 -32.89276 -29.39248 -28.87828 -26.77468 -25.20294 -24.24106 -21.01881 -19.86270 -18.42253 -17.18411 -15.82528 -15.61586 -14.70750 -14.69770 -14.17024 -13.34445 -13.27259 -12.83922 -12.60512 -12.41218 -12.11965 -11.73412 -11.50196 -11.13719 -10.98705 -10.69533 -10.54872 -10.33541 -9.62532 -9.43779 -9.25073 -9.02214 -8.65727 -7.26968 -6.69176 -6.11059 -4.27264 2.18208 2.88823 3.12515 3.18347 3.27123 3.37400 4.00905 4.54504 4.76819 4.95350 5.13764 5.39256 5.62601 5.67373 5.86312 5.96637 6.02536 6.18351 6.31170 6.61374 6.66556 6.81926 6.93688 7.16079 7.18023 7.42539 7.49287 7.86063 8.00711 8.15400 8.21991 8.53494 8.77086 8.88636 9.05542 9.16623 10.29550 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.006896 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.409993 B = 4059.573924 C = 4622.857490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C -0.168 4.168 4 C 0.158 3.842 5 N -0.758 5.758 6 C 0.215 3.785 7 C -0.300 4.300 8 C -0.066 4.066 9 C -0.258 4.258 10 C 0.138 3.862 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.793 5.793 15 Si 0.903 3.097 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.232 4.232 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.390 0.610 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.276 0.724 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -8.832 -3.484 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C -0.187 4.187 4 C 0.034 3.966 5 N -0.392 5.392 6 C 0.116 3.884 7 C -0.323 4.323 8 C -0.085 4.085 9 C -0.278 4.278 10 C 0.135 3.865 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.139 4.139 14 N -0.419 5.419 15 Si 0.728 3.272 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.255 4.255 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.126 0.874 24 H 0.128 0.872 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.223 0.777 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.553 -8.940 -3.647 9.779 hybrid contribution 0.698 0.124 0.871 1.124 sum -0.855 -8.815 -2.776 9.282 Atomic orbital electron populations 1.20898 0.93305 1.01826 1.02471 1.22809 0.96359 0.97567 1.00600 1.23006 0.99906 0.94457 1.01307 1.20189 0.97363 0.88413 0.90680 1.44382 1.46649 1.16707 1.31422 1.17672 0.92302 0.83926 0.94460 1.19884 1.07935 0.99773 1.04714 1.20283 0.97590 0.93964 0.96661 1.20863 1.07340 0.99906 0.99736 1.17329 0.88762 0.90303 0.90095 1.19585 0.99511 1.17119 1.13265 0.90547 1.25874 0.95858 0.93772 0.98443 1.69877 1.03355 1.32702 1.35954 0.86349 0.79110 0.79238 0.82493 1.18449 1.19869 1.20133 1.20723 1.08279 0.95657 1.00883 0.91153 0.91561 0.92463 0.87408 0.87170 0.92750 0.92384 0.77709 0.89700 0.89635 0.89385 0.91281 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.65 36.00 0.31 -1.08 16 2 C -0.15 -1.79 10.26 -36.03 -0.37 -2.16 16 3 C -0.17 -2.24 9.63 -36.03 -0.35 -2.59 16 4 C 0.16 2.58 5.14 -5.19 -0.03 2.55 16 5 N -0.76 -15.07 5.72 -59.86 -0.34 -15.42 16 6 C 0.22 5.18 6.64 -83.86 -0.56 4.62 16 7 C -0.30 -7.02 9.32 -39.09 -0.36 -7.39 16 8 C -0.07 -1.57 10.02 -39.69 -0.40 -1.96 16 9 C -0.26 -6.66 9.79 -38.83 -0.38 -7.04 16 10 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 11 C -0.46 -12.76 9.05 -37.74 -0.34 -13.10 16 12 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 13 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 14 N -0.79 -21.04 10.95 55.55 0.61 -20.43 16 15 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 16 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 C -0.23 -6.20 8.53 -38.68 -0.33 -6.53 16 20 H 0.07 0.85 7.67 -51.93 -0.40 0.45 16 21 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 24 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 25 H 0.05 0.91 7.93 -51.93 -0.41 0.50 16 26 H 0.06 0.94 5.61 -51.93 -0.29 0.64 16 27 H 0.39 7.41 8.47 -40.82 -0.35 7.07 16 28 H 0.08 1.79 6.70 -52.49 -0.35 1.43 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 32 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -28.56 272.30 -8.34 -36.91 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.19 Total: 10.27 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -3.49 Total: -29.52 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.27 Total: -35.84 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.56 -8.34 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435391.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.427 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds