Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31004 * 120.00128 * 2 1 4 4 C 1.50699 * 119.99872 * 0.02562 * 3 2 1 5 5 N 1.46506 * 109.46848 * 124.99815 * 4 3 2 6 6 C 1.39683 * 119.99792 * 179.97438 * 5 4 3 7 7 C 1.39335 * 119.95193 * 359.72963 * 6 5 4 8 8 C 1.38477 * 120.42267 * 179.71851 * 7 6 5 9 9 C 1.37694 * 120.32435 * 0.55726 * 8 7 6 10 10 C 1.40746 * 119.88934 * 359.72131 * 9 8 7 11 11 C 1.41415 * 120.20518 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00029 * 24.40756 * 11 10 9 13 13 C 1.39929 * 119.99981 * 204.41004 * 11 10 9 14 14 N 1.30822 * 120.00228 * 17.88533 * 13 11 10 15 15 Si 1.86802 * 119.99774 * 197.88554 * 13 11 10 16 16 H 1.48505 * 109.47141 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47293 * 119.99610 * 15 13 11 18 18 H 1.48494 * 109.47276 * 239.99845 * 15 13 11 19 19 C 1.38276 * 119.94963 * 180.02562 * 6 5 4 20 20 H 1.08999 * 109.46963 * 299.72425 * 1 2 3 21 21 H 1.09002 * 109.47260 * 59.71905 * 1 2 3 22 22 H 1.08999 * 109.47251 * 179.72304 * 1 2 3 23 23 H 1.07998 * 119.99990 * 180.27723 * 2 1 3 24 24 H 1.07999 * 120.00061 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47220 * 245.00042 * 4 3 2 26 26 H 1.08997 * 109.47090 * 5.00554 * 4 3 2 27 27 H 0.96999 * 119.99815 * 0.02562 * 5 4 3 28 28 H 1.07999 * 119.78724 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.83889 * 180.27619 * 8 7 6 30 30 H 1.07999 * 120.05361 * 179.74427 * 9 8 7 31 31 H 0.96999 * 120.00019 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.15980 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 7 1.8509 3.2583 1.1321 6 6 1.2915 4.5210 1.3414 7 6 0.3169 5.0032 0.4702 8 6 -0.2484 6.2512 0.6718 9 6 0.1552 7.0345 1.7299 10 6 1.1429 6.5631 2.6149 11 6 1.5619 7.3617 3.7041 12 1 0.9031 8.1185 4.1038 13 6 2.8302 7.1716 4.2639 14 7 3.7512 6.5278 3.5939 15 14 3.2082 7.8370 5.9679 16 1 2.0065 8.5204 6.5103 17 1 3.5861 6.7154 6.8648 18 1 4.3323 8.8037 5.8837 19 6 1.7102 5.2932 2.4094 20 1 -0.3633 0.5095 0.8924 21 1 -0.3634 0.5182 -0.8875 22 1 -0.3634 -1.0276 -0.0050 23 1 2.0470 -0.9353 -0.0045 24 1 3.2420 1.1345 -0.0004 25 1 1.6026 2.9716 -0.9307 26 1 0.3403 2.2424 0.0906 27 1 2.5328 2.9238 1.7355 28 1 -0.0032 4.3978 -0.3649 29 1 -1.0063 6.6138 -0.0068 30 1 -0.2857 8.0088 1.8806 31 1 4.6302 6.3957 3.9822 32 1 2.4687 4.9222 3.0828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313435391.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = 12.858324 kcal Electronic energy + Delta-G solvation = -13735.150884 eV Core-core repulsion = 11466.529743 eV Total energy + Delta-G solvation = -2268.621141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69532 -37.61519 -35.67058 -34.56667 -31.34992 -30.39688 -28.02212 -27.14427 -25.63500 -22.90635 -21.72484 -19.55038 -19.09479 -17.46743 -16.91705 -16.46617 -16.38814 -15.83586 -14.76453 -14.71480 -14.26142 -14.05681 -13.99431 -13.79018 -13.28829 -12.90728 -12.72360 -12.59043 -12.45779 -12.10787 -11.72732 -11.52696 -11.32515 -11.08761 -10.55519 -9.99451 -9.25779 -8.62117 -7.91180 -6.32242 1.07644 1.17492 1.33056 1.38934 1.53870 1.57773 2.23572 2.80774 3.01855 3.85981 3.91962 4.17917 4.48556 4.49875 4.54525 4.67813 4.79582 4.80927 4.99153 5.08266 5.17022 5.20460 5.29995 5.44193 5.59861 5.69139 5.84123 5.97206 6.10674 6.21526 6.26431 6.58009 6.94254 7.04699 7.06583 7.24886 8.38680 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.006896 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.409993 B = 4059.573924 C = 4622.857490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 C -0.191 4.191 4 C 0.158 3.842 5 N -0.753 5.753 6 C 0.217 3.783 7 C -0.304 4.304 8 C -0.062 4.062 9 C -0.286 4.286 10 C 0.108 3.892 11 C -0.504 4.504 12 H 0.072 0.928 13 C 0.036 3.964 14 N -0.824 5.824 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.264 1.264 18 H -0.265 1.265 19 C -0.260 4.260 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.133 0.867 24 H 0.116 0.884 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.392 0.608 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.285 0.715 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -10.184 -3.809 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C -0.210 4.210 4 C 0.034 3.966 5 N -0.385 5.385 6 C 0.116 3.884 7 C -0.327 4.327 8 C -0.080 4.080 9 C -0.306 4.306 10 C 0.105 3.895 11 C -0.534 4.534 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.450 5.450 15 Si 0.802 3.198 16 H -0.183 1.183 17 H -0.189 1.189 18 H -0.190 1.190 19 C -0.285 4.285 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.151 0.849 24 H 0.134 0.866 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.722 -10.325 -4.002 11.207 hybrid contribution 0.698 0.418 0.850 1.177 sum -1.024 -9.908 -3.151 10.447 Atomic orbital electron populations 1.20969 0.92865 1.03222 1.01951 1.23124 0.96843 0.97888 0.97194 1.22847 1.00138 0.93497 1.04469 1.20326 0.98033 0.89300 0.88930 1.44539 1.46036 1.15639 1.32313 1.17820 0.91989 0.85117 0.93505 1.20230 1.07356 1.00010 1.05120 1.20660 0.97592 0.93670 0.96118 1.21039 1.08012 1.00778 1.00791 1.17735 0.89807 0.91049 0.90953 1.19841 1.00695 1.18129 1.14686 0.90938 1.26738 0.95019 0.93796 1.02261 1.69931 1.03935 1.33402 1.37704 0.85190 0.78979 0.78793 0.76872 1.18257 1.18915 1.19014 1.20656 1.09159 0.96315 1.02330 0.92480 0.91181 0.90238 0.84908 0.86597 0.93179 0.91938 0.77480 0.87002 0.86206 0.89047 0.90444 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.65 71.23 0.62 -1.91 16 2 C -0.13 -2.65 10.26 25.64 0.26 -2.39 16 3 C -0.19 -4.71 9.63 25.64 0.25 -4.47 16 4 C 0.16 4.90 5.14 85.63 0.44 5.34 16 5 N -0.75 -29.67 5.72 -343.29 -1.96 -31.63 16 6 C 0.22 10.47 6.64 38.16 0.25 10.72 16 7 C -0.30 -13.90 9.32 22.59 0.21 -13.68 16 8 C -0.06 -2.87 10.02 22.20 0.22 -2.65 16 9 C -0.29 -15.00 9.79 22.75 0.22 -14.78 16 10 C 0.11 6.18 5.57 -21.31 -0.12 6.06 16 11 C -0.50 -28.66 9.05 23.46 0.21 -28.45 16 12 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 13 C 0.04 1.92 5.14 85.25 0.44 2.35 16 14 N -0.82 -44.74 10.95 21.82 0.24 -44.50 16 15 Si 0.98 39.64 29.59 68.60 2.03 41.67 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 19 C -0.26 -14.38 8.53 22.85 0.20 -14.18 16 20 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 21 H 0.07 1.29 7.84 -2.39 -0.02 1.27 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 24 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 25 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16 26 H 0.06 1.90 5.61 -2.39 -0.01 1.88 16 27 H 0.39 14.95 8.47 -92.71 -0.79 14.16 16 28 H 0.11 4.44 6.70 -2.91 -0.02 4.42 16 29 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 31 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 32 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 Total: -1.00 -62.48 272.30 3.83 -58.65 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.32 Total: 33.83 kcal Atomic # 6 Polarization: -61.23 SS G_CDS: 3.20 Total: -58.03 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.73 Total: -76.13 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -62.48 3.83 -58.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435391.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.506 kcal (2) G-P(sol) polarization free energy of solvation -62.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds