Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.30997 * 119.99882 * 2 1 4 4 C 1.50701 * 120.00182 * 359.97438 * 3 2 1 5 5 N 1.46497 * 109.47285 * 124.99547 * 4 3 2 6 6 C 1.38859 * 120.00261 * 179.97438 * 5 4 3 7 7 C 1.39568 * 119.83755 * 359.73135 * 6 5 4 8 8 C 1.36347 * 120.15459 * 179.72123 * 7 6 5 9 9 C 1.40880 * 119.83817 * 0.54448 * 8 7 6 10 10 C 1.41141 * 120.15426 * 179.69963 * 9 8 7 11 11 H 1.08002 * 119.99673 * 204.63623 * 10 9 8 12 12 C 1.39866 * 119.99769 * 24.63918 * 10 9 8 13 13 N 1.30903 * 120.00157 * 17.95094 * 12 10 9 14 14 Si 1.86800 * 119.99669 * 197.95014 * 12 10 9 15 15 H 1.48508 * 109.47038 * 60.00033 * 14 12 10 16 16 H 1.48504 * 109.46871 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47340 * 300.00290 * 14 12 10 18 18 C 1.40890 * 119.69002 * 359.73199 * 9 8 7 19 19 C 1.36338 * 119.83508 * 359.97438 * 18 9 8 20 20 H 1.09000 * 109.47004 * 299.99866 * 1 2 3 21 21 H 1.08998 * 109.47085 * 60.00042 * 1 2 3 22 22 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 23 23 H 1.07999 * 119.99629 * 179.97438 * 2 1 3 24 24 H 1.07995 * 119.99995 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47457 * 244.99899 * 4 3 2 26 26 H 1.09002 * 109.47013 * 5.00074 * 4 3 2 27 27 H 0.97005 * 120.00129 * 0.02562 * 5 4 3 28 28 H 1.07999 * 119.92297 * 359.97438 * 7 6 5 29 29 H 1.07997 * 120.07327 * 180.27818 * 8 7 6 30 30 H 0.96997 * 119.99554 * 180.02562 * 13 12 10 31 31 H 1.08002 * 120.08045 * 179.97438 * 18 9 8 32 32 H 1.07999 * 119.91817 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 7 1.8499 3.2588 1.1309 6 6 1.2937 4.5142 1.3379 7 6 0.3183 4.9945 0.4628 8 6 -0.2363 6.2238 0.6633 9 6 0.1857 7.0143 1.7503 10 6 -0.3794 8.2905 1.9604 11 1 0.1737 9.0433 2.5025 12 6 -1.6555 8.5802 1.4667 13 7 -2.4634 7.6069 1.1298 14 14 -2.2069 10.3560 1.2880 15 1 -1.2926 11.0670 0.3585 16 1 -3.5897 10.3929 0.7478 17 1 -2.1769 11.0197 2.6161 18 6 1.1749 6.5254 2.6263 19 6 1.7164 5.2917 2.4171 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.0470 -0.9353 0.0004 24 1 3.2420 1.1345 0.0004 25 1 1.6033 2.9712 -0.9319 26 1 0.3402 2.2424 0.0886 27 1 2.5313 2.9247 1.7350 28 1 -0.0008 4.3893 -0.3728 29 1 -0.9942 6.5923 -0.0122 30 1 -3.3483 7.8078 0.7870 31 1 1.5035 7.1263 3.4614 32 1 2.4751 4.9158 3.0875 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379487092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = 32.224033 kcal Electronic energy + Delta-G solvation = -13638.888270 eV Core-core repulsion = 11371.106889 eV Total energy + Delta-G solvation = -2267.781381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.04950 -36.31108 -34.13526 -32.53904 -29.42670 -29.07608 -27.35891 -25.19974 -23.65642 -21.10019 -19.99733 -18.41579 -17.17265 -15.96389 -15.85518 -14.94989 -14.59958 -13.83109 -13.35976 -13.28790 -12.82874 -12.54326 -12.40187 -11.94670 -11.75552 -11.69317 -11.10308 -10.99252 -10.89391 -10.65221 -10.44093 -9.69382 -9.30706 -9.20771 -9.03190 -8.46052 -7.46177 -6.61166 -6.34932 -4.00198 2.15377 2.95767 3.13146 3.16099 3.19461 3.39122 4.07773 4.54829 4.79549 4.93241 5.11234 5.38241 5.61838 5.68602 5.85172 5.96796 6.00806 6.16955 6.30846 6.35771 6.62635 6.79149 6.97219 6.99028 7.23349 7.39137 7.59138 7.72387 7.88041 8.18141 8.32836 8.53185 8.74925 8.84084 9.09021 9.18671 10.40480 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.051258 B = 0.005930 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.124669 B = 4720.283053 C = 5113.428252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.153 4.153 3 C -0.170 4.170 4 C 0.160 3.840 5 N -0.759 5.759 6 C 0.092 3.908 7 C -0.165 4.165 8 C -0.124 4.124 9 C 0.074 3.926 10 C -0.468 4.468 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.809 5.809 14 Si 0.903 3.097 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.186 4.186 19 C -0.160 4.160 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.384 0.616 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.276 0.724 31 H 0.091 0.909 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -9.226 -2.680 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 C -0.188 4.188 4 C 0.035 3.965 5 N -0.395 5.395 6 C -0.005 4.005 7 C -0.187 4.187 8 C -0.144 4.144 9 C 0.071 3.929 10 C -0.499 4.499 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.436 5.436 14 Si 0.728 3.272 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.207 4.207 19 C -0.182 4.182 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.216 0.784 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.577 -9.286 -2.928 10.373 hybrid contribution -0.025 0.580 0.141 0.597 sum 3.552 -8.706 -2.787 9.807 Atomic orbital electron populations 1.20912 0.93209 1.01879 1.02615 1.22825 0.96435 0.97545 1.00358 1.22981 0.99733 0.94526 1.01590 1.20152 0.97439 0.88325 0.90596 1.43822 1.47255 1.16692 1.31707 1.17381 0.98729 0.86228 0.98182 1.20095 1.00367 0.98168 1.00037 1.20933 1.01087 0.94004 0.98396 1.17491 0.91625 0.93285 0.90521 1.19336 1.00089 0.98133 1.32369 0.90989 1.25787 0.96278 0.98603 0.93334 1.69850 1.06964 1.33199 1.33594 0.86468 0.77830 0.83409 0.79490 1.19092 1.20595 1.19281 1.20545 1.03771 0.95785 1.00571 1.19807 1.03418 0.96361 0.98597 0.91080 0.91461 0.92449 0.87447 0.87310 0.92939 0.92478 0.78382 0.89446 0.86383 0.91296 0.89051 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.65 36.01 0.31 -1.11 16 2 C -0.15 -1.70 10.26 -36.02 -0.37 -2.07 16 3 C -0.17 -2.13 9.63 -36.02 -0.35 -2.48 16 4 C 0.16 2.51 5.13 -5.19 -0.03 2.48 16 5 N -0.76 -13.84 5.69 -59.67 -0.34 -14.18 16 6 C 0.09 2.07 6.67 -83.69 -0.56 1.51 16 7 C -0.16 -3.96 9.23 -39.77 -0.37 -4.33 16 8 C -0.12 -3.32 8.64 -39.26 -0.34 -3.66 16 9 C 0.07 2.03 5.57 -106.79 -0.60 1.44 16 10 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 11 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 12 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 13 N -0.81 -21.76 10.96 55.54 0.61 -21.15 16 14 Si 0.90 19.44 29.60 -169.99 -5.03 14.41 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 C -0.19 -4.72 9.74 -39.26 -0.38 -5.11 16 19 C -0.16 -3.69 9.82 -39.77 -0.39 -4.08 16 20 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 21 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 24 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 25 H 0.05 0.85 7.91 -51.93 -0.41 0.44 16 26 H 0.06 0.93 5.59 -51.93 -0.29 0.64 16 27 H 0.38 6.28 8.46 -40.82 -0.35 5.93 16 28 H 0.09 1.92 6.68 -52.49 -0.35 1.57 16 29 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 30 H 0.28 6.81 8.30 -40.82 -0.34 6.48 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 271.97 15.07 4.10 4.10 Total: -1.00 -28.46 271.97 -8.35 -36.81 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.19 Total: 8.81 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -3.50 Total: -28.79 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.27 Total: -35.33 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.46 -8.35 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379487092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.031 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds