Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.28329 * 299.31962 * 9 7 2 11 11 C 1.54252 * 110.32707 * 61.44962 * 9 7 2 12 12 C 1.54381 * 105.06115 * 118.89819 * 11 9 7 13 13 N 1.48550 * 104.59608 * 23.85351 * 12 11 9 14 14 C 1.46904 * 111.00104 * 200.96055 * 13 12 11 15 15 C 1.52993 * 109.47004 * 290.12534 * 14 13 12 16 16 H 1.09003 * 109.47305 * 304.99620 * 15 14 13 17 17 O 1.42894 * 109.47226 * 65.00120 * 15 14 13 18 18 C 1.53003 * 109.47014 * 185.00238 * 15 14 13 19 19 F 1.39902 * 109.47082 * 175.00426 * 18 15 14 20 20 C 1.48568 * 104.22266 * 320.51863 * 13 12 11 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09008 * 110.32538 * 237.79353 * 11 9 7 23 23 H 1.09000 * 110.32754 * 0.02562 * 11 9 7 24 24 H 1.09006 * 110.41381 * 142.63571 * 12 11 9 25 25 H 1.08998 * 110.41100 * 265.07324 * 12 11 9 26 26 H 1.09001 * 109.46731 * 50.12874 * 14 13 12 27 27 H 1.09003 * 109.47141 * 170.12246 * 14 13 12 28 28 H 0.96695 * 114.00111 * 59.99846 * 17 15 14 29 29 H 1.09001 * 109.46671 * 294.99841 * 18 15 14 30 30 H 1.08997 * 109.47295 * 55.00026 * 18 15 14 31 31 H 1.08997 * 110.40978 * 280.70442 * 20 13 12 32 32 H 1.08994 * 110.41273 * 158.26535 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6282 -2.5759 0.8918 11 6 0.3850 -2.6178 -1.2703 12 6 0.9186 -3.8668 -2.0042 13 7 1.5555 -4.6833 -0.9391 14 6 2.5222 -5.6311 -1.5094 15 6 1.7746 -6.7168 -2.2859 16 1 1.0374 -7.1868 -1.6349 17 8 1.1134 -6.1299 -3.4085 18 6 2.7697 -7.7714 -2.7742 19 9 2.0748 -8.8209 -3.3849 20 6 2.2352 -3.6864 -0.0723 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6629 -2.7547 -1.0030 23 1 0.5051 -1.7323 -1.8945 24 1 0.0979 -4.4166 -2.4651 25 1 1.6548 -3.5808 -2.7554 26 1 3.1962 -5.1015 -2.1827 27 1 3.0981 -6.0903 -0.7059 28 1 1.7095 -5.6926 -4.0317 29 1 3.4528 -7.3206 -3.4941 30 1 3.3369 -8.1559 -1.9266 31 1 3.1774 -3.3721 -0.5211 32 1 2.4059 -4.1003 0.9215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397613768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -110.204133 kcal Electronic energy + Delta-G solvation = -15088.399032 eV Core-core repulsion = 12383.672278 eV Total energy + Delta-G solvation = -2704.726754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.72302 -38.79560 -36.74156 -33.50073 -31.47933 -29.18850 -28.17288 -25.17370 -23.71852 -21.88408 -20.42694 -19.54492 -17.13731 -16.80862 -16.56844 -15.86343 -15.37963 -14.74073 -14.30368 -14.21955 -13.77474 -13.34528 -12.87469 -12.62992 -11.72237 -11.66555 -11.55939 -11.26707 -10.92238 -10.88008 -10.65614 -10.40456 -10.12183 -9.93203 -9.74200 -9.43792 -8.47461 -8.31979 -7.96452 -6.34215 -4.06871 3.42130 3.43476 3.62581 4.00714 4.25126 4.52504 4.69255 4.70704 4.84947 5.01535 5.25273 5.37968 5.48248 5.59389 5.71435 5.95264 6.02227 6.16608 6.25725 6.47253 6.69677 6.90233 7.00429 7.31323 7.42887 7.52054 7.57680 7.68300 8.25851 8.41383 8.88277 9.65838 11.04620 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.070099 B = 0.006092 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.341988 B = 4595.367776 C = 4702.594862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.597 4.597 8 H 0.047 0.953 9 C 0.033 3.967 10 H 0.024 0.976 11 C -0.116 4.116 12 C 0.042 3.958 13 N -0.512 5.512 14 C 0.014 3.986 15 C 0.082 3.918 16 H 0.116 0.884 17 O -0.547 6.547 18 C 0.032 3.968 19 F -0.213 7.213 20 C 0.046 3.954 21 H 0.274 0.726 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.370 0.630 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.148 -11.482 -5.059 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.185 4.185 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.636 4.636 8 H 0.065 0.935 9 C 0.014 3.986 10 H 0.042 0.958 11 C -0.155 4.155 12 C -0.085 4.085 13 N -0.236 5.236 14 C -0.115 4.115 15 C 0.022 3.978 16 H 0.134 0.866 17 O -0.351 6.351 18 C -0.024 4.024 19 F -0.194 7.194 20 C -0.081 4.081 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.217 0.783 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.016 -10.418 -4.470 12.397 hybrid contribution 1.489 -1.096 -0.705 1.979 sum 6.505 -11.515 -5.174 14.201 Atomic orbital electron populations 1.70764 1.06808 1.31183 1.45845 1.25763 0.96570 1.02443 0.93730 0.83575 0.74917 0.75562 0.76418 1.20750 1.21611 1.21503 1.21999 0.93814 0.91460 1.56314 0.93506 1.19521 0.92930 0.92640 0.93554 0.95822 1.22552 0.98402 0.95500 0.99062 1.23174 0.98229 0.94360 0.92739 1.65373 1.26161 1.15242 1.16783 1.22808 0.94633 0.95524 0.98560 1.22581 0.95278 0.91894 0.88006 0.86644 1.86699 1.37667 1.75101 1.35660 1.22738 0.94584 0.86708 0.98363 1.92780 1.81710 1.59621 1.85291 1.23189 0.96982 0.92328 0.95580 0.91485 0.93774 0.91445 0.90157 0.95356 0.94524 0.90231 0.78265 0.90685 0.89884 0.94577 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.20 13.27 55.43 0.74 -26.46 16 2 C 0.02 0.55 5.09 -17.82 -0.09 0.46 16 3 Si 1.07 24.89 29.90 -169.99 -5.08 19.81 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.60 -16.57 8.37 -34.44 -0.29 -16.86 16 8 H 0.05 1.29 7.58 -52.48 -0.40 0.89 16 9 C 0.03 0.82 2.65 -90.39 -0.24 0.58 16 10 H 0.02 0.65 8.04 -51.93 -0.42 0.23 16 11 C -0.12 -2.74 5.03 -25.35 -0.13 -2.87 16 12 C 0.04 0.83 5.11 -2.19 -0.01 0.82 16 13 N -0.51 -9.46 5.37 -229.97 -1.24 -10.70 16 14 C 0.01 0.20 4.63 -3.83 -0.02 0.18 16 15 C 0.08 1.02 3.52 -26.73 -0.09 0.93 16 16 H 0.12 1.58 8.14 -51.93 -0.42 1.15 16 17 O -0.55 -7.44 10.57 -35.23 -0.37 -7.82 16 18 C 0.03 0.31 7.18 37.16 0.27 0.58 16 19 F -0.21 -2.72 17.35 2.25 0.04 -2.68 16 20 C 0.05 0.97 6.02 -2.18 -0.01 0.96 16 21 H 0.27 8.14 6.00 -40.82 -0.25 7.89 16 22 H 0.04 1.04 7.92 -51.92 -0.41 0.63 16 23 H 0.07 1.74 7.24 -51.93 -0.38 1.36 16 24 H 0.08 1.52 6.80 -51.93 -0.35 1.17 16 25 H 0.03 0.53 7.82 -51.93 -0.41 0.12 16 26 H 0.04 0.49 7.88 -51.93 -0.41 0.08 16 27 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.37 3.82 9.04 45.56 0.41 4.23 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.76 7.56 -51.93 -0.39 0.37 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -31.08 261.97 -6.49 -37.57 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.91 Total: 1.55 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.62 Total: -15.21 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.50 Total: -37.16 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.37 Total: -7.82 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.08 -6.49 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397613768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.633 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds