Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.28329 * 299.31962 * 9 7 2 11 11 C 1.54252 * 110.32707 * 61.44962 * 9 7 2 12 12 C 1.54381 * 105.06115 * 118.89819 * 11 9 7 13 13 N 1.48550 * 104.59608 * 23.85351 * 12 11 9 14 14 C 1.46904 * 111.00104 * 200.96055 * 13 12 11 15 15 C 1.52993 * 109.47004 * 290.12534 * 14 13 12 16 16 H 1.09003 * 109.47305 * 304.99620 * 15 14 13 17 17 O 1.42894 * 109.47226 * 65.00120 * 15 14 13 18 18 C 1.53003 * 109.47014 * 185.00238 * 15 14 13 19 19 F 1.39902 * 109.47082 * 175.00426 * 18 15 14 20 20 C 1.48568 * 104.22266 * 320.51863 * 13 12 11 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09008 * 110.32538 * 237.79353 * 11 9 7 23 23 H 1.09000 * 110.32754 * 0.02562 * 11 9 7 24 24 H 1.09006 * 110.41381 * 142.63571 * 12 11 9 25 25 H 1.08998 * 110.41100 * 265.07324 * 12 11 9 26 26 H 1.09001 * 109.46731 * 50.12874 * 14 13 12 27 27 H 1.09003 * 109.47141 * 170.12246 * 14 13 12 28 28 H 0.96695 * 114.00111 * 59.99846 * 17 15 14 29 29 H 1.09001 * 109.46671 * 294.99841 * 18 15 14 30 30 H 1.08997 * 109.47295 * 55.00026 * 18 15 14 31 31 H 1.08997 * 110.40978 * 280.70442 * 20 13 12 32 32 H 1.08994 * 110.41273 * 158.26535 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6282 -2.5759 0.8918 11 6 0.3850 -2.6178 -1.2703 12 6 0.9186 -3.8668 -2.0042 13 7 1.5555 -4.6833 -0.9391 14 6 2.5222 -5.6311 -1.5094 15 6 1.7746 -6.7168 -2.2859 16 1 1.0374 -7.1868 -1.6349 17 8 1.1134 -6.1299 -3.4085 18 6 2.7697 -7.7714 -2.7742 19 9 2.0748 -8.8209 -3.3849 20 6 2.2352 -3.6864 -0.0723 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6629 -2.7547 -1.0030 23 1 0.5051 -1.7323 -1.8945 24 1 0.0979 -4.4166 -2.4651 25 1 1.6548 -3.5808 -2.7554 26 1 3.1962 -5.1015 -2.1827 27 1 3.0981 -6.0903 -0.7059 28 1 1.7095 -5.6926 -4.0317 29 1 3.4528 -7.3206 -3.4941 30 1 3.3369 -8.1559 -1.9266 31 1 3.1774 -3.3721 -0.5211 32 1 2.4059 -4.1003 0.9215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397613768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -133.791148 kcal Electronic energy + Delta-G solvation = -15089.421842 eV Core-core repulsion = 12383.672278 eV Total energy + Delta-G solvation = -2705.749564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.59344 -40.23325 -38.04119 -35.34730 -32.88708 -30.61020 -29.94477 -26.66085 -25.49405 -22.93692 -21.97697 -21.44086 -18.97335 -17.83816 -17.71411 -16.87987 -16.65447 -16.01920 -15.77396 -15.55367 -15.48426 -14.94610 -14.43198 -13.78512 -13.56584 -13.19573 -13.14831 -12.72447 -12.25467 -12.18350 -12.02243 -11.96601 -11.86342 -11.80675 -11.43327 -10.77665 -10.57249 -10.43412 -9.43906 -8.59144 -6.32937 1.53419 1.61118 1.80230 2.57682 2.89679 3.20687 3.35571 3.63063 3.83590 3.93265 4.00380 4.13788 4.23539 4.34277 4.35769 4.47934 4.63805 4.72838 4.82585 4.88192 4.97727 5.07888 5.23817 5.36994 5.60908 5.72491 6.12847 6.15961 6.23762 6.65465 6.73584 7.49059 8.79668 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.070099 B = 0.006092 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.341988 B = 4595.367776 C = 4702.594862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.031 4.031 3 Si 1.114 2.886 4 H -0.286 1.286 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.608 4.608 8 H 0.048 0.952 9 C 0.019 3.981 10 H -0.010 1.010 11 C -0.111 4.111 12 C 0.059 3.941 13 N -0.519 5.519 14 C 0.015 3.985 15 C 0.087 3.913 16 H 0.099 0.901 17 O -0.568 6.568 18 C 0.035 3.965 19 F -0.231 7.231 20 C 0.059 3.941 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.384 0.616 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -12.340 -5.735 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.230 4.230 3 Si 0.936 3.064 4 H -0.212 1.212 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.646 4.646 8 H 0.066 0.934 9 C 0.000 4.000 10 H 0.008 0.992 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.243 5.243 14 C -0.114 4.114 15 C 0.027 3.973 16 H 0.117 0.883 17 O -0.375 6.375 18 C -0.020 4.020 19 F -0.212 7.212 20 C -0.068 4.068 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.234 0.766 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.055 0.945 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.047 -11.312 -5.154 14.289 hybrid contribution 0.846 -0.869 -0.476 1.303 sum 7.893 -12.181 -5.630 15.568 Atomic orbital electron populations 1.70882 1.07904 1.30504 1.48112 1.27226 0.96601 1.06325 0.92838 0.82970 0.74128 0.71475 0.77835 1.21194 1.19587 1.19626 1.22361 0.94049 0.92734 1.55459 0.93410 1.19544 0.93716 0.93931 0.92787 0.99195 1.22366 0.97658 0.96565 0.98401 1.22992 0.98752 0.92494 0.92606 1.65312 1.27607 1.14689 1.16675 1.22935 0.94055 0.94781 0.99643 1.22493 0.95349 0.91971 0.87483 0.88274 1.86657 1.39075 1.75520 1.36280 1.22823 0.93771 0.85492 0.99900 1.92747 1.82284 1.60453 1.85714 1.22939 0.95698 0.91362 0.96845 0.92853 0.95125 0.94302 0.89372 0.94208 0.93159 0.88080 0.76637 0.88193 0.87335 0.94453 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.27 21.45 0.28 -57.21 16 2 C -0.03 -1.79 5.09 84.65 0.43 -1.36 16 3 Si 1.11 49.76 29.90 68.60 2.05 51.81 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.61 -33.97 8.37 25.60 0.21 -33.76 16 8 H 0.05 2.60 7.58 -2.91 -0.02 2.58 16 9 C 0.02 0.99 2.65 -10.65 -0.03 0.96 16 10 H -0.01 -0.58 8.04 -2.38 -0.02 -0.60 16 11 C -0.11 -5.35 5.03 31.49 0.16 -5.19 16 12 C 0.06 2.24 5.11 86.45 0.44 2.68 16 13 N -0.52 -18.26 5.37 -881.50 -4.73 -23.00 16 14 C 0.01 0.36 4.63 86.30 0.40 0.75 16 15 C 0.09 1.91 3.52 30.59 0.11 2.02 16 16 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 17 O -0.57 -14.15 10.57 -148.98 -1.57 -15.73 16 18 C 0.04 0.56 7.18 71.98 0.52 1.08 16 19 F -0.23 -5.33 17.35 44.97 0.78 -4.55 16 20 C 0.06 2.42 6.02 86.45 0.52 2.94 16 21 H 0.26 16.23 6.00 -92.71 -0.56 15.67 16 22 H 0.03 1.50 7.92 -2.38 -0.02 1.48 16 23 H 0.04 2.05 7.24 -2.39 -0.02 2.03 16 24 H 0.09 3.23 6.80 -2.38 -0.02 3.21 16 25 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 26 H 0.05 1.14 7.88 -2.39 -0.02 1.12 16 27 H 0.10 2.07 8.13 -2.39 -0.02 2.05 16 28 H 0.38 6.85 9.04 -74.06 -0.67 6.18 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -67.90 261.97 0.22 -67.68 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.65 Total: 10.86 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 2.76 Total: -29.87 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -4.45 Total: -80.21 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.57 Total: -15.73 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -67.90 0.22 -67.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397613768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.107 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds