Wall clock time and date at job start Mon Mar 30 2020 02:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.47009 * 89.99908 * 13 12 11 15 15 C 1.46900 * 110.99807 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.49857 * 223.62320 * 15 14 13 17 17 C 1.52997 * 117.49780 * 155.00067 * 15 14 13 18 18 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 19 19 C 1.37614 * 120.25107 * 359.44663 * 18 12 11 20 20 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.13408 * 0.05564 * 10 9 7 22 22 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 23 23 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 24 24 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 25 25 H 1.00899 * 110.99907 * 303.95485 * 14 13 12 26 26 H 1.08996 * 115.55184 * 9.32406 * 15 14 13 27 27 H 1.09006 * 117.49849 * 359.97438 * 16 15 14 28 28 H 1.08995 * 117.50344 * 145.01882 * 16 15 14 29 29 H 1.09002 * 117.50026 * 214.97234 * 17 15 14 30 30 H 1.08996 * 117.49993 * 359.97438 * 17 15 14 31 31 H 1.08003 * 119.87291 * 179.69838 * 18 12 11 32 32 H 1.08002 * 120.12976 * 180.27263 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 7 -0.0433 -6.5451 2.7394 15 6 -0.7021 -7.7899 3.1571 16 6 -1.0406 -7.9465 4.6410 17 6 0.1026 -8.7573 4.0275 18 6 -0.4120 -3.5333 1.5634 19 6 0.2229 -2.3640 1.2121 20 1 -0.4850 0.8401 -0.0004 21 1 2.6872 -3.6942 -0.7374 22 1 1.5339 -5.7607 -0.0797 23 1 -1.6958 -5.8233 1.6614 24 1 -0.5250 -6.7642 0.7063 25 1 0.9512 -6.6800 2.6351 26 1 -1.3951 -8.2206 2.4344 27 1 -0.7742 -7.1259 5.3073 28 1 -1.9565 -8.4801 4.8947 29 1 -0.0613 -9.8245 3.8776 30 1 1.1209 -8.4704 4.2897 31 1 -1.2815 -3.5021 2.2032 32 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398995555.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:51 Heat of formation + Delta-G solvation = 34.836479 kcal Electronic energy + Delta-G solvation = -13581.072302 eV Core-core repulsion = 11313.404206 eV Total energy + Delta-G solvation = -2267.668096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.03402 -37.14431 -34.19068 -32.67985 -29.67134 -29.17167 -26.12707 -23.15250 -22.28611 -21.00140 -20.84303 -19.83112 -17.27832 -15.87837 -15.46825 -15.22620 -14.23101 -14.01651 -13.52389 -13.32193 -12.69329 -12.51851 -11.93355 -11.73564 -11.51392 -11.41921 -11.07417 -10.98033 -10.64206 -10.45241 -10.40423 -10.17098 -9.56027 -9.35342 -9.11261 -7.93895 -7.42181 -7.29085 -6.74993 -4.33550 2.75376 3.07634 3.10096 3.11763 3.19391 3.93809 3.94255 4.36918 4.71902 5.01518 5.09035 5.37657 5.67064 5.70104 5.77271 5.88519 5.94000 6.05849 6.24281 6.28974 6.38292 6.48065 6.97949 7.08721 7.31570 7.37667 7.45086 7.63337 7.71517 7.90969 8.07633 8.17059 8.32070 8.66564 8.91241 8.99889 10.19700 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.063614 B = 0.005443 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.046701 B = 5142.911709 C = 5263.510008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.228 4.228 11 C -0.085 4.085 12 C -0.216 4.216 13 C 0.127 3.873 14 N -0.655 5.655 15 C 0.019 3.981 16 C -0.174 4.174 17 C -0.199 4.199 18 C -0.078 4.078 19 C -0.168 4.168 20 H 0.280 0.720 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.020 0.980 25 H 0.341 0.659 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -8.519 4.082 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.104 4.104 12 C -0.217 4.217 13 C -0.001 4.001 14 N -0.286 5.286 15 C -0.092 4.092 16 C -0.212 4.212 17 C -0.237 4.237 18 C -0.097 4.097 19 C -0.187 4.187 20 H 0.091 0.909 21 H 0.109 0.891 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.161 0.839 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.523 -7.949 4.456 9.239 hybrid contribution 0.662 0.152 -0.685 0.965 sum -0.861 -7.797 3.771 8.704 Atomic orbital electron populations 1.69831 1.07608 1.29173 1.35187 1.25909 0.94703 1.01298 0.92216 0.86332 0.80802 0.80770 0.79013 1.19609 1.20024 1.18426 1.19599 0.98095 0.91330 1.40304 0.90499 1.17627 0.91053 0.91975 0.88313 1.20930 1.03821 0.92962 1.07043 1.20364 0.95617 0.96267 0.98138 1.18897 1.01570 0.92940 1.08326 1.20598 0.97763 0.93820 0.87920 1.60403 1.07731 1.25402 1.35028 1.22424 1.01345 0.91964 0.93463 1.23100 0.98575 1.02355 0.97170 1.23216 0.97277 0.97062 1.06161 1.20505 0.98262 0.92498 0.98433 1.21314 0.99394 0.96800 1.01209 0.90898 0.89136 0.89893 0.91812 0.96165 0.83882 0.88810 0.88409 0.89326 0.89218 0.88715 0.89442 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.69 10.97 55.55 0.61 -20.08 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.11 3.05 5.57 -106.83 -0.60 2.45 16 10 C -0.23 -5.66 9.80 -38.88 -0.38 -6.04 16 11 C -0.09 -1.91 9.67 -39.66 -0.38 -2.29 16 12 C -0.22 -4.74 5.41 -104.33 -0.56 -5.30 16 13 C 0.13 2.29 5.66 -4.97 -0.03 2.26 16 14 N -0.65 -10.80 6.74 -108.00 -0.73 -11.53 16 15 C 0.02 0.26 6.26 -67.71 -0.42 -0.17 16 16 C -0.17 -2.11 10.46 -26.73 -0.28 -2.39 16 17 C -0.20 -2.27 10.33 -26.73 -0.28 -2.55 16 18 C -0.08 -1.86 9.67 -39.66 -0.38 -2.25 16 19 C -0.17 -4.44 8.70 -38.87 -0.34 -4.77 16 20 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 21 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 22 H 0.08 1.64 8.06 -52.49 -0.42 1.21 16 23 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 24 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 25 H 0.34 5.56 8.68 -39.29 -0.34 5.22 16 26 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 27 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 32 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 LS Contribution 276.17 15.07 4.16 4.16 Total: -1.00 -27.16 276.17 -9.49 -36.65 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.42 Total: 9.06 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -4.08 Total: -31.99 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: -0.12 Total: -31.60 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.16 -9.49 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398995555.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.488 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds