Wall clock time and date at job start Mon Mar 30 2020 02:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.47009 * 89.99908 * 13 12 11 15 15 C 1.46900 * 110.99807 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.49857 * 223.62320 * 15 14 13 17 17 C 1.52997 * 117.49780 * 155.00067 * 15 14 13 18 18 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 19 19 C 1.37614 * 120.25107 * 359.44663 * 18 12 11 20 20 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.13408 * 0.05564 * 10 9 7 22 22 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 23 23 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 24 24 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 25 25 H 1.00899 * 110.99907 * 303.95485 * 14 13 12 26 26 H 1.08996 * 115.55184 * 9.32406 * 15 14 13 27 27 H 1.09006 * 117.49849 * 359.97438 * 16 15 14 28 28 H 1.08995 * 117.50344 * 145.01882 * 16 15 14 29 29 H 1.09002 * 117.50026 * 214.97234 * 17 15 14 30 30 H 1.08996 * 117.49993 * 359.97438 * 17 15 14 31 31 H 1.08003 * 119.87291 * 179.69838 * 18 12 11 32 32 H 1.08002 * 120.12976 * 180.27263 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 7 -0.0433 -6.5451 2.7394 15 6 -0.7021 -7.7899 3.1571 16 6 -1.0406 -7.9465 4.6410 17 6 0.1026 -8.7573 4.0275 18 6 -0.4120 -3.5333 1.5634 19 6 0.2229 -2.3640 1.2121 20 1 -0.4850 0.8401 -0.0004 21 1 2.6872 -3.6942 -0.7374 22 1 1.5339 -5.7607 -0.0797 23 1 -1.6958 -5.8233 1.6614 24 1 -0.5250 -6.7642 0.7063 25 1 0.9512 -6.6800 2.6351 26 1 -1.3951 -8.2206 2.4344 27 1 -0.7742 -7.1259 5.3073 28 1 -1.9565 -8.4801 4.8947 29 1 -0.0613 -9.8245 3.8776 30 1 1.1209 -8.4704 4.2897 31 1 -1.2815 -3.5021 2.2032 32 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398995555.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:51 Heat of formation + Delta-G solvation = 19.810995 kcal Electronic energy + Delta-G solvation = -13581.723856 eV Core-core repulsion = 11313.404206 eV Total energy + Delta-G solvation = -2268.319650 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66105 -38.45701 -35.91900 -34.22467 -31.46067 -31.04016 -27.87431 -24.82650 -23.20359 -22.85419 -21.97448 -21.62312 -19.21596 -17.21599 -16.92140 -16.73472 -15.78623 -15.69613 -15.12503 -14.88128 -14.24563 -13.91416 -13.80291 -13.35356 -13.22070 -12.73195 -12.69697 -12.33138 -12.26284 -12.12367 -11.67049 -11.40220 -11.26523 -11.12511 -10.98616 -9.34645 -9.29143 -9.06781 -8.63571 -6.33083 0.94845 1.15549 1.38034 1.48662 1.54480 2.21142 2.69226 2.97681 3.29970 3.80168 4.07369 4.14417 4.23804 4.33024 4.45526 4.57124 4.63759 4.78856 4.82078 4.91873 5.07047 5.10605 5.16800 5.33816 5.38950 5.46976 5.71907 5.94893 6.10894 6.19399 6.30077 6.39638 6.50430 6.71661 6.94822 7.04898 8.33829 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.063614 B = 0.005443 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.046701 B = 5142.911709 C = 5263.510008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.079 3.921 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.204 4.204 13 C 0.135 3.865 14 N -0.667 5.667 15 C 0.000 4.000 16 C -0.174 4.174 17 C -0.181 4.181 18 C -0.086 4.086 19 C -0.193 4.193 20 H 0.288 0.712 21 H 0.097 0.903 22 H 0.117 0.883 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.341 0.659 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -9.971 4.440 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.077 3.923 10 C -0.263 4.263 11 C -0.103 4.103 12 C -0.205 4.205 13 C 0.007 3.993 14 N -0.298 5.298 15 C -0.111 4.111 16 C -0.212 4.212 17 C -0.219 4.219 18 C -0.105 4.105 19 C -0.212 4.212 20 H 0.098 0.902 21 H 0.115 0.885 22 H 0.135 0.865 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.161 0.839 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.534 -9.426 4.820 10.697 hybrid contribution 0.605 0.429 -0.754 1.058 sum -0.929 -8.997 4.066 9.917 Atomic orbital electron populations 1.69884 1.09073 1.30515 1.35787 1.26769 0.95476 1.04555 0.91157 0.85202 0.79179 0.75962 0.79416 1.18611 1.19015 1.18288 1.19853 0.98338 0.92656 1.42477 0.90713 1.17978 0.91886 0.93178 0.89245 1.21165 1.04467 0.93252 1.07459 1.20704 0.95215 0.96879 0.97454 1.19339 1.00768 0.94028 1.06383 1.20471 0.97350 0.92211 0.89286 1.60280 1.07896 1.27652 1.33966 1.22513 1.02567 0.91610 0.94375 1.23157 0.99916 1.02365 0.95802 1.23282 0.96858 0.97856 1.03934 1.20733 0.98545 0.92637 0.98590 1.21273 1.00395 0.97036 1.02506 0.90166 0.88513 0.86546 0.91542 0.94427 0.83936 0.87786 0.89775 0.87412 0.86971 0.88889 0.88213 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.41 10.97 21.83 0.24 -44.17 16 2 C 0.04 1.82 5.14 85.26 0.44 2.25 16 3 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.99 9.05 23.46 0.21 -27.78 16 8 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.08 4.43 5.57 -21.29 -0.12 4.31 16 10 C -0.24 -12.21 9.80 22.73 0.22 -11.99 16 11 C -0.08 -3.66 9.67 22.22 0.21 -3.44 16 12 C -0.20 -8.70 5.41 -19.67 -0.11 -8.80 16 13 C 0.13 4.54 5.66 85.56 0.48 5.03 16 14 N -0.67 -20.50 6.74 -495.59 -3.34 -23.84 16 15 C 0.00 -0.01 6.26 44.91 0.28 0.27 16 16 C -0.17 -3.77 10.46 30.59 0.32 -3.45 16 17 C -0.18 -3.55 10.33 30.59 0.32 -3.23 16 18 C -0.09 -4.14 9.67 22.22 0.21 -3.93 16 19 C -0.19 -10.53 8.70 22.73 0.20 -10.33 16 20 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 21 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 22 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 23 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 24 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 25 H 0.34 10.36 8.68 -89.69 -0.78 9.58 16 26 H 0.10 2.32 7.90 -2.39 -0.02 2.31 16 27 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.10 5.60 6.18 -2.91 -0.02 5.58 16 Total: -1.00 -59.36 276.17 1.93 -57.43 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.33 Total: 30.66 kcal Atomic # 6 Polarization: -63.78 SS G_CDS: 2.68 Total: -61.10 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -3.10 Total: -68.01 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -59.36 1.93 -57.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398995555.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.241 kcal (2) G-P(sol) polarization free energy of solvation -59.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds