Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.24477 * 2 1 4 4 N 1.48059 * 110.20481 * 238.12566 * 2 1 3 5 5 C 1.48053 * 103.88315 * 268.55191 * 4 2 1 6 6 H 1.09000 * 110.27418 * 91.47909 * 5 4 2 7 7 C 1.50697 * 110.20731 * 213.34448 * 5 4 2 8 8 H 1.07994 * 119.99892 * 116.24758 * 7 5 4 9 9 C 1.37876 * 119.99749 * 296.24574 * 7 5 4 10 10 N 1.31510 * 120.00502 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 119.99891 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47076 * 60.00160 * 11 9 7 13 13 H 1.48499 * 109.47039 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47145 * 300.00520 * 11 9 7 15 15 C 1.51180 * 105.67365 * 332.39728 * 5 4 2 16 16 C 1.38180 * 131.77298 * 197.85799 * 15 5 4 17 17 C 1.38224 * 120.02898 * 180.17743 * 16 15 5 18 18 C 1.38256 * 119.99902 * 359.43992 * 17 16 15 19 19 C 1.38224 * 120.00569 * 0.27760 * 18 17 16 20 20 C 1.38179 * 120.02565 * 0.02562 * 19 18 17 21 21 H 1.08995 * 109.47027 * 298.12415 * 1 2 3 22 22 H 1.08999 * 109.47213 * 58.12411 * 1 2 3 23 23 H 1.09004 * 109.47268 * 178.12289 * 1 2 3 24 24 H 1.08994 * 109.46927 * 181.87846 * 3 2 1 25 25 H 1.09001 * 109.46743 * 301.87868 * 3 2 1 26 26 H 1.08998 * 109.47025 * 61.87189 * 3 2 1 27 27 H 1.00899 * 110.99818 * 27.91416 * 4 2 1 28 28 H 0.96999 * 120.00320 * 179.97438 * 10 9 7 29 29 H 1.07997 * 119.98757 * 359.88900 * 16 15 5 30 30 H 1.08002 * 120.00359 * 179.72601 * 17 16 15 31 31 H 1.08000 * 120.00077 * 180.29611 * 18 17 16 32 32 H 1.07993 * 119.98526 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0594 1.4355 0.0000 4 7 2.0414 -0.7337 -1.1800 5 6 2.1982 -2.1233 -0.6937 6 1 1.2879 -2.6934 -0.8795 7 6 3.3720 -2.7825 -1.3709 8 1 4.2261 -3.0945 -0.7884 9 6 3.3554 -2.9872 -2.7343 10 7 2.3155 -2.6067 -3.4438 11 14 4.8107 -3.8036 -3.5740 12 1 5.0092 -5.1628 -3.0096 13 1 4.5474 -3.9061 -5.0319 14 1 6.0326 -2.9905 -3.3480 15 6 2.4490 -2.0100 0.7928 16 6 2.9749 -2.9015 1.7083 17 6 3.0942 -2.5391 3.0368 18 6 2.6979 -1.2801 3.4482 19 6 2.1771 -0.3856 2.5320 20 6 2.0518 -0.7494 1.2049 21 1 -0.3633 0.4844 0.9063 22 1 -0.3633 0.5427 -0.8727 23 1 -0.3634 -1.0271 -0.0337 24 1 3.1488 1.4209 -0.0337 25 1 1.6759 1.9641 -0.8727 26 1 1.7306 1.9440 0.9063 27 1 1.3851 -0.6902 -1.9451 28 1 2.3040 -2.7504 -4.4031 29 1 3.2886 -3.8835 1.3864 30 1 3.5012 -3.2378 3.7527 31 1 2.7955 -0.9952 4.4853 32 1 1.8672 0.5976 2.8538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584621548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = 10.429083 kcal Electronic energy + Delta-G solvation = -14655.430424 eV Core-core repulsion = 12386.703943 eV Total energy + Delta-G solvation = -2268.726481 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27954 -37.57484 -35.14909 -33.01918 -30.87498 -30.39064 -28.13471 -27.92795 -24.41127 -23.83478 -21.68141 -20.31824 -18.36718 -17.12081 -16.48604 -16.35407 -16.01688 -15.47309 -14.89877 -14.65117 -14.25941 -13.92973 -13.64670 -13.40719 -12.96507 -12.91937 -12.88222 -12.67972 -12.35585 -12.22829 -12.18514 -11.57336 -11.36764 -11.14416 -10.58920 -9.62643 -9.60001 -8.80572 -8.12129 -6.23113 0.58910 0.64695 1.40272 1.42914 1.49888 2.43291 3.00264 3.13836 3.66259 3.85723 4.01824 4.21830 4.31199 4.32604 4.35861 4.70964 4.73708 4.78352 4.91547 4.95582 5.05403 5.11998 5.15366 5.18022 5.33786 5.48015 5.65153 5.69701 5.76070 5.87412 6.20698 6.31204 6.47284 6.85893 6.89206 7.45459 8.96229 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.011214 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.566700 B = 2496.373262 C = 3142.150818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.112 3.888 3 C -0.113 4.113 4 N -0.643 5.643 5 C 0.235 3.765 6 H -0.018 1.018 7 C -0.519 4.519 8 H 0.048 0.952 9 C 0.026 3.974 10 N -0.913 5.913 11 Si 0.957 3.043 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.277 1.277 15 C -0.099 4.099 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.106 4.106 20 C -0.113 4.113 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.331 0.669 28 H 0.262 0.738 29 H 0.108 0.892 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 4.923 10.976 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 C -0.171 4.171 4 N -0.272 5.272 5 C 0.128 3.872 6 H -0.001 1.001 7 C -0.558 4.558 8 H 0.067 0.933 9 C -0.174 4.174 10 N -0.552 5.552 11 Si 0.783 3.217 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.202 1.202 15 C -0.100 4.100 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.113 4.113 21 H 0.099 0.901 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.166 0.834 31 H 0.176 0.824 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.142 5.146 10.799 12.017 hybrid contribution -0.306 -1.091 -1.054 1.548 sum -1.448 4.055 9.745 10.654 Atomic orbital electron populations 1.22264 0.94957 1.00765 1.03135 1.20739 0.93083 0.95329 0.88789 1.21589 1.00368 0.93135 1.01993 1.63918 1.47485 1.10530 1.05228 1.18408 0.94261 0.87418 0.87114 1.00083 1.21166 1.03333 1.38203 0.93065 0.93344 1.25678 0.98319 0.95515 0.97899 1.69949 1.30630 1.47799 1.06826 0.85641 0.79829 0.78929 0.77308 1.19563 1.20663 1.20214 1.21171 0.96996 0.95405 0.96384 1.20711 1.00547 0.99476 0.93683 1.21343 1.00377 0.97826 0.94481 1.21362 0.99524 0.93275 1.00481 1.20760 1.00164 1.00767 0.90717 1.20823 1.00109 0.95221 0.95186 0.90131 0.91533 0.95115 0.94051 0.92400 0.90329 0.85262 0.92868 0.87358 0.83392 0.82423 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.51 71.98 0.61 -4.56 16 2 C 0.11 4.39 1.12 2.71 0.00 4.39 16 3 C -0.11 -3.73 8.78 71.98 0.63 -3.10 16 4 N -0.64 -31.89 6.57 -453.06 -2.98 -34.87 16 5 C 0.24 12.66 2.90 43.35 0.13 12.78 16 6 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 7 C -0.52 -30.15 8.68 25.60 0.22 -29.93 16 8 H 0.05 2.82 7.57 -2.91 -0.02 2.80 16 9 C 0.03 1.50 5.42 84.66 0.46 1.96 16 10 N -0.91 -53.40 12.57 21.45 0.27 -53.13 16 11 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 C -0.10 -4.57 5.67 -19.68 -0.11 -4.68 16 16 C -0.13 -5.10 9.67 22.25 0.22 -4.89 16 17 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 18 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 19 C -0.11 -3.29 9.82 22.25 0.22 -3.07 16 20 C -0.11 -4.47 4.99 -19.68 -0.10 -4.57 16 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 27 H 0.33 17.04 7.96 -89.69 -0.71 16.33 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.14 3.44 7.95 -2.91 -0.02 3.42 16 Total: -1.00 -64.99 268.40 2.43 -62.56 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.39 Total: 20.82 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 2.73 Total: -42.58 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.71 Total: -88.00 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.99 2.43 -62.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584621548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.993 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds